Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02171 ATGAGGAAGCCAGAGATATCtggaaaaaacaacaataaGCTAAGAAAAGGATTGTGGTCACCAGAGGAAGATGATAAGTTGATGAACTACATGTTAAACAGTGGACAAGGTTGTTGGAGTGATGTTGCAAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATTAATTACTTGAGACCTGATCTTAAACGTGGTGCATTCTCACCTCAAGAAGAAGAACTTATCATTCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCAGCACGCCTACCTGGGAGAACAGACAATGAAATCAAGAACTTCTGGAATTCAACAATAAAGAAAAGACTAAAGAACATGTCGAACACCTCACCGAACGCAAGCGATGAATCCTCGTACGATCCTAACAAAGACCATAACAACATGGGAGGAGGGTTTATAACTTCCTCAACAGTACAAGATCAACATCACATTGATAATCATTTTATGCCTATGTTCAATACATCATCTCCACCATCAATGCAAAACACAGTTTTCAATACTATCATCTCATCATCTAGTGGTGGATTCTTCAACAATAATAGTACTACAGGAACATTCTTCTCACAGAATAATAATCATGACAACAAAAGTTATTATTTGGAAAAAATGTTTGGGGGTGTAAATATTAATGGTGCAGAAGGGGTAGAGATGGAAATTTACAATGTTCCACCTCTAGAGAGTGTTAATAATAGTACTATTACTTCTGAAAATAATACTATAAAAATGGAGAATAATGCATGCAATATTGGAGAAGATACTAATTACAATATTAGTAGTTATATCTTTGATGACATAAACAACATTGTTAACAACTGCAATGTTGTTAAGAGAATTGATCAAAATAGAGCTGTTGATGAGGTGGAGAATTTATTTCATGGAGATTTAACTGTTGCAGATTGGGACTTAGAGGATTTGATGAAAGATGTTTCATCTTTTCCCTTTCTTGATTTTTCAAATTGA 1005 0.3453 MRKPEISGKNNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSNTSPNASDESSYDPNKDHNNMGGGFITSSTVQDQHHIDNHFMPMFNTSSPPSMQNTVFNTIISSSSGGFFNNNSTTGTFFSQNNNHDNKSYYLEKMFGGVNINGAEGVEMEIYNVPPLESVNNSTITSENNTIKMENNACNIGEDTNYNISSYIFDDINNIVNNCNVVKRIDQNRAVDEVENLFHGDLTVADWDLEDLMKDVSSFPFLDFSN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02171 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tsu02g02171 334 SMART sant 15 65 IPR001005 -
Tsu02g02171 334 SMART sant 68 116 IPR001005 -
Tsu02g02171 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tsu02g02171 334 CDD SANT 71 111 IPR001005 -
Tsu02g02171 334 Gene3D - 70 142 - -
Tsu02g02171 334 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tsu02g02171 334 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Tsu02g02171 334 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tsu02g02171 334 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Tsu02g02171 334 Gene3D - 13 69 - -
Tsu02g02171 334 PANTHER MYB DOMAIN PROTEIN 55 7 333 - -
Tsu02g02171 334 CDD SANT 19 63 IPR001005 -
Tsu02g02171 334 MobiDBLite consensus disorder prediction 120 140 - -
Tsu02g02171 334 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Tsu02g02171 334 PANTHER MYB TRANSCRIPTION FACTOR 7 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02171 Tsu-Chr2 21308945 21311840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02171 1 332 MYB Transcription Factor Family AT3G08500 44.384 3.58e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g02171 Myb_DNA-binding 9.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02171 K09422 - gmx:100785810 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02171 02 21308945 21311840 Tsu02g02171 02 21308945 21311840 ECH