Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02141 ATGGAGTCAGATCAATGTGATcaaggtggtggtggtgatgatcAAGATGGTTTAAAACAAGTGACCAATTTAAGGTCCTATGAGTGCAATTTTTGCAAGAGAGGTTTCTCTAATGCACAAGCACTTGGAGGACACATGAATATTCATAGGAAAGATAAAGCAAAGCTCAAACAACAATCTTCAAATTTGGAGCAAGGAAATTCTAGTGAAGAAATCAACAAATTATTaccaatttttttgaattctAATATTGTGCTGCCTCAAAAacaagatcaacaacaacatgtCTCTTCTAGAAGTGAAGAAATTCTTGTAATTGATCATACAAGACAACAACTTCCACTTTTTTCAGAATTaccaacaaaaattgaaatgcaaATTCCACAAGGTGGTCAAATTCATCAAAGGGaaattactactactactgcgacgactactactactactgcaCCTGCACGATCTAATGATCAAGATTCTTCATTGGAGTTAGACCTTGAATTAAGACTAGGGTCTGAGCCTCATGATTCATCAAAGCCAACGGGTACAAGAAAATTCTTTTGA 561 0.2763 MESDQCDQGGGGDDQDGLKQVTNLRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNLEQGNSSEEINKLLPIFLNSNIVLPQKQDQQQHVSSRSEEILVIDHTRQQLPLFSELPTKIEMQIPQGGQIHQREITTTTATTTTTTAPARSNDQDSSLELDLELRLGSEPHDSSKPTGTRKFF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02141 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Tsu02g02141 186 MobiDBLite consensus disorder prediction 167 186 - -
Tsu02g02141 186 Pfam C2H2-type zinc finger 27 51 - -
Tsu02g02141 186 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
Tsu02g02141 186 Gene3D Classic Zinc Finger 16 77 - -
Tsu02g02141 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 178 - -
Tsu02g02141 186 PANTHER OS07G0101800 PROTEIN 3 178 - -
Tsu02g02141 186 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02141 Tsu-Chr2 21042883 21043443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02141 25 90 C2H2 Transcription Factor Family AT3G53820 49.351 7.70e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g02141 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02141 - - vun:114170729 133.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02141 02 21042883 21043443 Tsu02g02141 02 21042883 21043443 ECH