Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02124 ATGGGGGAAGAAGTTCGAACAGACGAAGAACGTGTAACGGAGTGGGAAAAAGGTTTACCCAATCTTCACGATCTAACTCCACTTTCCATGGCGTTAATTCCACCGGAATTAGCTTCCGCTTTTAGCATCTCGCCGGAGCCTCACCGTACACTCATCGACGTCAACCGCGCGTCACGTAACACACTCTCAATTCTCCGAAACAGCGGAGGAGGAACAAATCACAACTTCTCACCAGaaccagaagaagaagatgaagaaatcgAAGACGAAACGGAACGAGATGGTTCTGGATCTGATTCAAGAAAGCATCGGAAAATTGATTCGGTTACGGAGGAAGCAGATTCGGCTGTTAGAACAACTGAAACGACGTTAAAACGGCCGCGTTTGGTTTGGACTCCACAGTTACATAAAAGATTTGTTGATGTAGTTGCTCATCTTGGAATTAAAAACGCTGTTCCGAAAACGATTATGCAGTTGATGAATGTTGAAGGATTAACACGTGAAAATGTTGCTTCTCATTTGCAGAAATATCGTCTTTATTTGAAAAGGATGCAAGGACTTTCTAATGATGCACCTTCTTCTTCTGATCATCTTTTTGCATCTACACCTGTTCCTCAGAGTTTGCAATTGCAGCAACATGAATCTGTTTCTGCTAATAATCATTCTCATTCGAATGGACATGGAAATGGGAATAATTCTCATTCACATCATTCTGTTACTATTCCTATGCCTTATCCACCACCTCCGACGATGATGACAATGCCGCCGATGCTTGGTATGggacatcatcatcatcatccacatGGTCATATGGGGATGAGTTTGCCTCCGCCATCTGGTTCTAACTCGTTTCGGTCGCATCCGTTTAATATGATGCATCATAGGGATTGGCCTCCGAATCCTCACTCTCATCATCCTCATATGTCTGCTAATGATAGTAATAAGTAA 948 0.4093 MGEEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPHRTLIDVNRASRNTLSILRNSGGGTNHNFSPEPEEEDEEIEDETERDGSGSDSRKHRKIDSVTEEADSAVRTTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLQLQQHESVSANNHSHSNGHGNGNNSHSHHSVTIPMPYPPPPTMMTMPPMLGMGHHHHHPHGHMGMSLPPPSGSNSFRSHPFNMMHHRDWPPNPHSHHPHMSANDSNK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02124 315 Pfam Myb-like DNA-binding domain 130 178 IPR001005 -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 209 247 - -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 64 120 - -
Tsu02g02124 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 182 IPR017930 -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 209 239 - -
Tsu02g02124 315 Gene3D - 122 185 - -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 294 315 - -
Tsu02g02124 315 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 300 - -
Tsu02g02124 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Tsu02g02124 315 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 300 IPR044841 GO:0003700|GO:0006355
Tsu02g02124 315 SUPERFAMILY Homeodomain-like 123 183 IPR009057 -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 94 120 - -
Tsu02g02124 315 MobiDBLite consensus disorder prediction 79 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02124 Tsu-Chr2 20928452 20931477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02124 1 209 G2-like Transcription Factor Family AT3G46640 59.914 1.02e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g02124 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02124 - - aprc:113858844 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02124 02 20928452 20931477 Tsu02g02124 02 20928452 20931477 ECH