Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02121 atgaTGAATTCAGAAACGCAACCCGAAACGGCGTCGTACTGGTGCTACAGCTGCACACGCTTCGTTAACCTATCAGATCACACCAACATCGTCTGTCCACACTGCGATAACGGTTTCATCGAAGAGATCCAAGCCGGCGACTCACCGAACCACCGTCTTAGTCCTTTTCCCGACGAAACCGTTTCTTCAAGAAGACAAGGCTCCCGCCATCGCCGTCGTGATGCTGGTAGTCGTTCACCTTTCAATCCTGTCATCGTTCTCCGTGGAAACGGTGAAGAAAGTAACGATCAAGACGGTAACGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGACGGTTCTGGTTTACGTCCGTTACCACCGACTGTTTCTGAGTTTCTACTTGGATCTGGATTTGATCGGTTGTTAGAACAGTTTTCTCAGATCGAGATGAACGGTTTTGGTCGGCCGGAGAATCCGCCGGCATCAAAGGCGGCAATTGAATCTATGCCGACGGTTGAGATCTGTGAGGAGCAAGTTAGCTCTGATTTACACTGTGCTGTTTGCAAAGAAGCTTTTGAGTTAGGCGTGGAAGCGCGTGAGTTACCTTGCAAGCATATCTACCATTCCGATTGTATTCTTCCATGGCTTACTGTGAGAAACTCATGCCCTGTGTGCCGTCACGAGCTTCCTTCTGATCTTAATAACCCGATTGAAACTAGGGTTTCAGGTCAAATCGATGAAGAAGCGATTGGATTAACTATATGGAGGTTACCTGGTGGTGGATTCGCTGTTGGAAGATTCTCCGGCGGGAGAAGTGCAGGGGAGAGTCATTTTCCAGTTGTGTACACTGAGATGGATGGTGGACTGAATGCAAATGGAGCTCCGAGAAGAATTTCTCGAGCGGTTAGAAGCCATAGGGTTACTGAAAGCCGCGGAGTTGGAAGAGTTTTtcgtaattttttttcattctttggGAGAATTGGTTCTTCTAGGTCAAATTCTGGTTCTGAGAATGTGTCTGTGAGTAGAAGCCGTAGTTTAGTGAGTTCAATTTTTAATAGAAACCGGCGAGGAAGTAGAAGAACTATGGAGTTGGAAGATTGA 1089 0.4628 MMNSETQPETASYWCYSCTRFVNLSDHTNIVCPHCDNGFIEEIQAGDSPNHRLSPFPDETVSSRRQGSRHRRRDAGSRSPFNPVIVLRGNGEESNDQDGNGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEQVSSDLHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDLNNPIETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRAVRSHRVTESRGVGRVFRNFFSFFGRIGSSRSNSGSENVSVSRSRSLVSSIFNRNRRGSRRTMELED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02121 362 SMART ring_2 180 220 IPR001841 -
Tsu02g02121 362 MobiDBLite consensus disorder prediction 46 104 - -
Tsu02g02121 362 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Tsu02g02121 362 CDD RING-H2_RNF126_like 180 221 - -
Tsu02g02121 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 227 IPR013083 -
Tsu02g02121 362 Pfam Protein of unknown function (DUF1117) 245 351 IPR010543 -
Tsu02g02121 362 Pfam Ring finger domain 179 221 IPR001841 -
Tsu02g02121 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 308 - -
Tsu02g02121 362 SUPERFAMILY RING/U-box 160 228 - -
Tsu02g02121 362 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Tsu02g02121 362 PANTHER OS05G0110000 PROTEIN 9 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02121 Tsu-Chr2 20832141 20834284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02121 119 227 C3H Transcription Factor Family AT5G01980 47.706 2.62e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02121 - - gmx:100804867 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02121 02 20832141 20834284 Tsu02g02121 02 20832141 20834284 ECH
Tsu02g05215 02 61088729 61091076 Tsu02g02121 02 20832141 20834284 ECH
Tsu04g01163 04 11545243 11546549 Tsu02g02121 02 20832141 20834284 ECH
Tsu02g05215 02 61088729 61091076 Tsu02g02121 02 20832141 20834284 PCT