Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02120 atgagtttttcttttcgaGGGAGTAGGGGAGATATTGAAAGCGGATTTTCAGAATATGTTCCTGAAAGAACCTCAACGCGGGTTCATCCATCTCGGCCAACTAATAGCAGCTCTCTAGCTTTTCTTTTCACAGTTATTTTGTTATTCATGATATTAAATTCGCCTCAGATGCTACATGATTTTTTGCTCTGGATAGTAATGGTGGTCTTTGTGATGGTTACAAGTCTGAGAGCATATGCAACTTGTCAACAGCTTCAAGAACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGTTTGCTTGGCCATGCTGAATTACGTTTTAACATGCCACCGTCTATTGCGATTGCATCTAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCAGGAATTTGATGAGCTTGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCGTTCAATGACTGACGAAGAGATAAATGCCTTGCCTGTTCACAAATATAAAGTTCCAAGCCCAACAAAAGATGGCTCCACCGGTTTGACATCCTCTTCTTCAGAAGCAGCTGAGATTAAACAAGAATCTAAAGGAGCAGAAGGAAGTGCCGAAGATCCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAATCGGGGGGAACTTGTCCGCAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTCATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTTAGCGTGTGGACGAGAAGGCAGAGAAACACCGAGAGCGAGTCAAATGATTCAGATATTGTGTAG 828 0.4336 MSFSFRGSRGDIESGFSEYVPERTSTRVHPSRPTNSSSLAFLFTVILLFMILNSPQMLHDFLLWIVMVVFVMVTSLRAYATCQQLQEQARAHAAAASGLLGHAELRFNMPPSIAIASRGRLQGLRLQLALLDQEFDELDYDTLRALDSDTASSTRSMTDEEINALPVHKYKVPSPTKDGSTGLTSSSSEAAEIKQESKGAEGSAEDPEDELTCTICLDQVNRGELVRSLPCLHQFHANCIHPWLRQQGTCPVCKFSVWTRRQRNTESESNDSDIV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02120 275 MobiDBLite consensus disorder prediction 149 206 - -
Tsu02g02120 275 CDD RING-H2_PA-TM-RING 212 254 - -
Tsu02g02120 275 PANTHER TARGET OF ERK KINASE MPK-1 1 275 - -
Tsu02g02120 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 272 IPR013083 -
Tsu02g02120 275 SUPERFAMILY RING/U-box 206 260 - -
Tsu02g02120 275 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Tsu02g02120 275 SMART ring_2 213 253 IPR001841 -
Tsu02g02120 275 Pfam Ring finger domain 212 254 IPR001841 -
Tsu02g02120 275 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 275 - -
Tsu02g02120 275 MobiDBLite consensus disorder prediction 177 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02120 Tsu-Chr2 20821880 20826201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02120 1 275 C3H Transcription Factor Family AT3G55530 64.855 3.40e-117 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02120 K16283 - gmx:100805406 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02120 02 20821880 20826201 Tsu02g02120 02 20821880 20826201 ECH