Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02113 ATGGATTATTCAAACTGTGATGATGAGTTTCAACACGGTTCTATGGAAACCATGTCCATGGAAGACACTGATTTTTCAGATACCATAAAGTTCATAACCCAAATCCTTATGGAAGAAAACTTTGACCAGAGACCCTTTTATGATCCACTTAGTTTACAACTCACAGAAAAATCATTCTTTGATGCTCTTTCCCCCAATCAACACCCCTTAGATTTTCATAACTCTGATGAAAGAATCAGCAACACTAGTAATAGCTCAACAAAACCTCTTTCAACTTGTGTTAGTGATGGACTTCTAGATTTGGATTCTTCTATTACAAACTTGTTAGCACAAAACATTTTCAGTAATGCAGATTCTGTTTCCCAATTCAAGAGAGGTTTTGAAGAAGCCAATAAGTTTCTTCCTCCTCAGCCTCAACTTTTGACTAGTCTAGAATCATCCGACTTCAATATGGTTGAGGAGAAAGAGAAACCATTTGTGTTGAAAGGTAGAAAGAATCACGAGCgcgaagaagatgaagaagagagGAGAAATAACAAGCAATCAGCTATTGGTGGTGGTGTTGTTGATGAGGAGGAGCTATCAGAAATGTTTGATAACGCTTTACTTAATGTCGAAAATGACTGCTTTCCGAATGAGAAGCTGCCTTTAGCTAATGGAGCAAAGGCCCGTCCTCGTCCTAAGAAACGTAATAGCAAAAACGAAACGATTGATTTGAGAAATCTTCTGCTTCTGTGCTCACAAGCTTTGTATGCCAATGACAATAGGAATGCTAATGAACTACTGAAGCAGATTAGGCAACATTCTTCGCCATCTGGAGATGCATCACAAAGGGTAGCACATTATTTTGCTAATGGACTTGAGGCACGCCTTTTAGGCGATGGAGCCGGTGCACAAACATTTTATTCCTCGCCGAGCACCAAGAGGATCACTGCTGCTGAGTTTTTGAAAGCATACCAAGTTCATTTTATTAGTCCTCCATTCAAAAAGTTTGCATATTTGTTTGCAAATAAAATGATTATGAAAGTTGCTGAAAAGGCTGAAACCCTTCATATCATTGATTTTGGCATCCTTTATGGTTTTCAGTGGCCGATGCTTATTAAGTACTTATCAAATAGAGAAGGTGGACCTCCAAAATTGAGAATCACTGGGATAGAGTTCCCTTTACCTGGCTTTCGTCCAACCGAAAGAATTGAGGAGGCTGGTCGCCGTCTGGCCAACTACTGCAAGCGTTTCAATGTTTCATTTGAGTACAATGGCATAGCGTCGCGGAACTGGGAAGCAATTCGAGTTGAAGATCTTAAAATTGAAAGCAATGAGGTAATCGCTGTGAACTGTATGACGAGGTTTAAGAATTTACTAGATGAGAGTATCGAAGTGGACAGTCCTAGAAATGTGGTTCTGCATTTGATTAGGAAGATAAATCCTGATATTTTTACTCTTTCCGTTATTAATGGATCATATAATTCACCATTCTTTGCAACGCGGTTTAAGGAGGCATTGTTTCATTTTTCTGCTATTTATGATATGTTAGACGCCGTCATACCAAGGGAAAATGAATGGAGGACGATGATAGAGAGGGAAATTATGGGTAGGGAAGTTATGAATGTTGTAGCTTGTGAAGGTTTAGAGAGAGTTGAGAGGCCTGAGACATATAAACTGTGGCAGGTTAGGAATACTAAGGCTGGTTTCAAGCAGCTTCCCTTGGACCAAGAATTAATGGCAAAATTTAGGACTAAGTTAAAGCAGTGGTACCATagagattttgattttgatgaagacAACAATTGGATGCTTCAAGGTTGGAAAGGTCGTATTTCATACGCTTCAACTTGTTGGGTGCCTGCATAA 1851 0.3847 MDYSNCDDEFQHGSMETMSMEDTDFSDTIKFITQILMEENFDQRPFYDPLSLQLTEKSFFDALSPNQHPLDFHNSDERISNTSNSSTKPLSTCVSDGLLDLDSSITNLLAQNIFSNADSVSQFKRGFEEANKFLPPQPQLLTSLESSDFNMVEEKEKPFVLKGRKNHEREEDEEERRNNKQSAIGGGVVDEEELSEMFDNALLNVENDCFPNEKLPLANGAKARPRPKKRNSKNETIDLRNLLLLCSQALYANDNRNANELLKQIRQHSSPSGDASQRVAHYFANGLEARLLGDGAGAQTFYSSPSTKRITAAEFLKAYQVHFISPPFKKFAYLFANKMIMKVAEKAETLHIIDFGILYGFQWPMLIKYLSNREGGPPKLRITGIEFPLPGFRPTERIEEAGRRLANYCKRFNVSFEYNGIASRNWEAIRVEDLKIESNEVIAVNCMTRFKNLLDESIEVDSPRNVVLHLIRKINPDIFTLSVINGSYNSPFFATRFKEALFHFSAIYDMLDAVIPRENEWRTMIEREIMGREVMNVVACEGLERVERPETYKLWQVRNTKAGFKQLPLDQELMAKFRTKLKQWYHRDFDFDEDNNWMLQGWKGRISYASTCWVPA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02113 616 Coils Coil 164 184 - -
Tsu02g02113 616 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 13 74 - -
Tsu02g02113 616 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 110 615 - -
Tsu02g02113 616 ProSiteProfiles GRAS family profile. 230 614 IPR005202 -
Tsu02g02113 616 MobiDBLite consensus disorder prediction 160 180 - -
Tsu02g02113 616 MobiDBLite consensus disorder prediction 160 185 - -
Tsu02g02113 616 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 74 IPR005202 -
Tsu02g02113 616 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 110 615 IPR005202 -
Tsu02g02113 616 Pfam GRAS domain family 239 613 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02113 Tsu-Chr2 20744013 20745863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02113 16 615 GRAS Transcription Factor Family AT2G29060 47.544 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g02113 GRAS 5.6e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02113 - - gmx:100795855 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02113 02 20744013 20745863 Tsu02g02113 02 20744013 20745863 ECH
Tsu02g05210 02 61055271 61057127 Tsu02g02113 02 20744013 20745863 ECH
Tsu02g02113 02 20744013 20745863 Tsu02g05210 02 61055271 61057127 PCT