Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02100 ATGGTGCCCAAAATACTCTACATTGCCTTTTTCATCTCTTCATTGTACATTGTTCAAGCTAGAATTCCAGGAATTTACTCTGGTGGTCAGTGGCAAACTGCTCATGCTACTTTCTACGGTGGATCTGATGCTTCCGGCACCATGGGAGGAGCATGTGGGTATGGAAATTTGTACAGTCAAGGATATGGAGTGAACACGGCGGCATTGAGCACTGCTCTGTTCAACAATGGTTTGAGTTGTGGTGCTTGTTTTGAGATAAAGTGTGCAAATGATAGAGAATGGTGTCATTCAGGGAGTCCTTCAATTTTCATTACTGCAACTAACTTTTGTCCTCCAAATTTTGCTCAACCAAGTGATAATGGTGGATGGTGTAATCCTCCCCGGCCTCATTTTGATCTTGCCATGCCTATGTTTCTTAAGATTGCCGAGTATCGTGCTGGTATCGTCCCTGTTGCTTATCGCCGGGTACCATGTAGAAAGCGCGGGGGAATAAGATTCACAGTTAACGGATTCCGTTACTTTAACTTGGTGTTAATTAGCAACGTAGCAGGTGCTGGAGATATCGTGCGCGCATACGTGAAAGGCACTCGAACCGGGTGGATGCCACTGAGCCGAAACTGGGGTCAGAACTGGCAATCTAACGCGGTTTTGGTGGGCCAGGCACTGTCTTTTCGTGTTTCAAGTAGTGACCGTAGATCTTCAACCTCATGGAATATTGCTCCACCTAGTTGGCAATTTGGTCAAACTTTCACTGGAAAAAATTTTCGAGTCTAA 774 0.4535 MVPKILYIAFFISSLYIVQARIPGIYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDREWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVLISNVAGAGDIVRAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPSWQFGQTFTGKNFRV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02100 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Tsu02g02100 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Tsu02g02100 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Tsu02g02100 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Tsu02g02100 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Tsu02g02100 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Tsu02g02100 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Tsu02g02100 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Tsu02g02100 257 SMART dpbb_1 66 153 IPR007112 -
Tsu02g02100 257 Gene3D - 19 159 IPR036908 -
Tsu02g02100 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Tsu02g02100 257 PANTHER EXPANSIN 4 256 - -
Tsu02g02100 257 Gene3D - 163 255 IPR036749 -
Tsu02g02100 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02100 Tsu-Chr2 20600452 20603806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02100 5 257 Expansin Gene Family AT2G39700 85.375 3.89e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02100 - - gmx:100809139 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02100 02 20600452 20603806 Tsu02g02100 02 20600452 20603806 ECH
Tsu02g02100 02 20600452 20603806 Tsu05g03216 05 43352150 43354364 ECH
Tsu02g05201 02 60988116 60990198 Tsu02g02100 02 20600452 20603806 ECH
Tsu04g01147 04 11370746 11374127 Tsu02g02100 02 20600452 20603806 ECH
Tsu02g05201 02 60988116 60990198 Tsu02g02100 02 20600452 20603806 PCT