Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02092 ATGGATGGACCTTCATCATCCTCTACAACACATGATGATCATGTTCAAGAAATATTTCAAATATCTGATGAGGAATATGCAGAGGAAATGCAATTACAAGAAGCGTTAATATTTTCCTCTGCTATTTCAAATACTACTGCAGCTATAAACAAAGAAATCGAAGTGATTGACGTTGAAATTGATAATGTTAGTAGCACCCGTTTGagaaaactcaaactcaaagaGACTTGTGAAGGtgaatcttcttcttcatctcaatTGAAACAAATTTCCTACTGTGGTATTTGTATGGAAGCTAAATCTATCAAAGAAATGTTCGAAAACCGAAAATGTTCGCATTCATTTTGTGAAGAATGTGTTGGAACATATCTAGCTGCAAAAATTCAAGAGAATATATCAATGGTAAAATGTCCTGATCCAAAATGCAATGGTATTTTAGAGCCACATAATTGTATTTCAATTATACCAAAAGATGTGTTTGATAGATGGGGAAATGCACTTTGTGAGAATATGGTGATAGGTTCAAAAAAATTTTATTGTCCTTTCAATGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGAAGATGTTACCGTTGCGGAATGTCCACATTGTCATCGATTATTCTGTGCACAATGTAAGGTTTCGTGGCACGCCGGTGTTGATTGTAGAGTGTTTCAAAGCTTGAAAGATGGCAAGCGAGGCAGGGAAGATTTAATGGCTATGGAACTTGCTAAGAACAAGAAATGGAAAAGATGTCCAAAATGCAGTTTCTATGTGGAAAAAAGAGAGGGATGTACTCGCATTACATGCAGGTATAAACAATTCTAG 831 0.3369 MDGPSSSSTTHDDHVQEIFQISDEEYAEEMQLQEALIFSSAISNTTAAINKEIEVIDVEIDNVSSTRLRKLKLKETCEGESSSSSQLKQISYCGICMEAKSIKEMFENRKCSHSFCEECVGTYLAAKIQENISMVKCPDPKCNGILEPHNCISIIPKDVFDRWGNALCENMVIGSKKFYCPFNDCSAMLLNDEKEDVTVAECPHCHRLFCAQCKVSWHAGVDCRVFQSLKDGKRGREDLMAMELAKNKKWKRCPKCSFYVEKREGCTRITCRYKQF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02092 276 SMART ibrneu5 161 223 IPR002867 -
Tsu02g02092 276 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 12 272 - -
Tsu02g02092 276 Pfam IBR domain, a half RING-finger domain 170 223 IPR002867 -
Tsu02g02092 276 Gene3D - 178 224 - -
Tsu02g02092 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 176 IPR013083 -
Tsu02g02092 276 Gene3D - 225 276 - -
Tsu02g02092 276 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Tsu02g02092 276 SUPERFAMILY RING/U-box 169 227 - -
Tsu02g02092 276 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 272 IPR031127 GO:0004842|GO:0016567
Tsu02g02092 276 SUPERFAMILY RING/U-box 236 271 - -
Tsu02g02092 276 ProSiteProfiles Zinc finger RING-type profile. 93 141 IPR001841 -
Tsu02g02092 276 SUPERFAMILY RING/U-box 89 170 - -
Tsu02g02092 276 ProSiteProfiles TRIAD supradomain profile. 89 276 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02092 Tsu-Chr2 20405575 20406405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02092 38 273 C3H Transcription Factor Family AT2G19610 24.291 5.75e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02092 K11975 - gmx:100816161 340.502