Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02090 ATGGAAATTGAGAAAGTAAACTCTATAATTGACCTAGTGAATGAGATAGCTAACATCTCAGATTTCAGACCTATGGTGAAGAAACAGTATTGTAATTTAGCAAGAAGGTTGAAACTGTTGATCCCTTTATTTGAAGAGATTAGGGATATGAAAGATTCAATTCCGATTGATACTTCAAAAGCTGTTGTTTTGTTCAAAGAAGCTCTTGAATCAGCTAGAGAACTTCTCAGATTTGGAAGTGAAGGAAGCAAGATTTACAtgATCCTTGAGAGAGACCAGATTATGAATAATTTCTATGAGGTGACAGCTCGATTGGAACAATCACTGGATGGAATTTCCTACGATAAGCTTGACATATCCGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAAAAGAGCCAAAGGCAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATCCCTTTACAACAATAGCAGTGACACAGCTTCAGATCCAGCTATTCTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGAGATCCAGGGGCGCGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACTTAGTCAAGGATGATACTGCAATAGCAAAAGGCGTTTCTTCAGGATTTTACGGATTAGAAGAAAATGATAAGAATCATCAGGTTCCTGTAATCCCTAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGACATACGAGCGTTCCTGTATCGAAAAGTGGTTGAAAGACGGGCATGGGACGTGCCCTAAAACACAGCAGACTCTTACCAGTACTGTTCTCACACCCAACTATGTCTTAAGAAGTCTAATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCTAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCTGGCGGTCCTGAAGACCAGAGATCAGCTGCGGGCGAGATCCGCCTTCTTGCAAAACGAAATGCAGATAACCGTGTAGCTATCGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCCGTGCCCGACTCCCGAACTCAAGAGCATGCTGTTACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGACACATTGTTTCTTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGTCTTTCAGTTATTGATGAAAACAAGGTTACAATTGGTTCTTCGGGAGCCATATCACCACTAGTGACACTGCTGAGTGAAGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGAAACAAGGGAAAGGCAGTAAGGGCTGGTGTTATTCCCACACTGATGCGATTACTGACAGAACCTGGCGGAGGAATGGTGGATGAAGCATTGGCCATTTTAGCCATTTTGTCTAGTCATCCAGAAGGGAAAGCTGCCATTGGGTCTGCTGAGGCAGTGCCGGTTTTGGTAGAGTTTATCGGGACTGGATCACCAAGGAACAAAGAGAACGCAGCCGCTGTTTTAGTTCACCTTTGTTCTGGTGATCGACAATATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCACAAAATGGTACCGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGCGAGCAGGAGCAGCAGGAAGTTCAGACGCAAACTGAACATCAAGCTCAGAACGATGATATCCAACCGCCTTTGATCATTAACCTCGATATTGACACCTGA 1989 0.4369 MEIEKVNSIIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPIDTSKAVVLFKEALESARELLRFGSEGSKIYMILERDQIMNNFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFKRAKGRVDEPDAKLYEDMSSLYNNSSDTASDPAILSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTAIAKGVSSGFYGLEENDKNHQVPVIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLKDGHGTCPKTQQTLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACSPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGHIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILSSHPEGKAAIGSAEAVPVLVEFIGTGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQQEVQTQTEHQAQNDDIQPPLIINLDIDT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02090 662 Coils Coil 616 636 - -
Tsu02g02090 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Tsu02g02090 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Tsu02g02090 662 Gene3D - 338 654 IPR011989 -
Tsu02g02090 662 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Tsu02g02090 662 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Tsu02g02090 662 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Tsu02g02090 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Tsu02g02090 662 SMART arm_5 464 504 IPR000225 GO:0005515
Tsu02g02090 662 SMART arm_5 546 586 IPR000225 GO:0005515
Tsu02g02090 662 SMART arm_5 423 463 IPR000225 GO:0005515
Tsu02g02090 662 SMART arm_5 588 628 IPR000225 GO:0005515
Tsu02g02090 662 SMART arm_5 382 422 IPR000225 GO:0005515
Tsu02g02090 662 SMART arm_5 505 545 IPR000225 GO:0005515
Tsu02g02090 662 CDD RING-Ubox_PUB 259 301 IPR045210 -
Tsu02g02090 662 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Tsu02g02090 662 Gene3D - 1 114 IPR036537 GO:0007166
Tsu02g02090 662 PANTHER U BOX DOMAIN-CONTAINING 4 643 - -
Tsu02g02090 662 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Tsu02g02090 662 SUPERFAMILY RING/U-box 245 331 - -
Tsu02g02090 662 SUPERFAMILY ARM repeat 353 636 IPR016024 -
Tsu02g02090 662 MobiDBLite consensus disorder prediction 328 349 - -
Tsu02g02090 662 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 643 - -
Tsu02g02090 662 MobiDBLite consensus disorder prediction 332 348 - -
Tsu02g02090 662 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02090 Tsu-Chr2 20386395 20391546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02090 1 646 U-box Gene Family AT3G46510 69.029 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02090 - - gmx:100812160 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02090 02 20386395 20391546 Tsu02g02090 02 20386395 20391546 ECH