Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02081 ATGGAGAGTGAGAATAATGATATTAATGGTATTTCATCAGGTTCATCATCAAGATGGAATCCAACAAAAGAACAAATAAGCATGTTGGAGAATTTGTATAAGCAAGGAATAAAGACACCAAGTGCTGAAGAAATACAACAGATAACTGCTAGGCTTAGAGTGTATGGTCACATCGAAGgaaagaatgttttttactggTTTCAGAATCACAAAGCTAGACAGAGACAGAAACAGAAGCAAGACAATATGGCTTATTTCAATCGACTTCTTCATAGACCAAATCCCATTTTTCCTTCGCCACCAATTTATCCAAATGCTATCTGCACACAATATTGCGTACAACAACCACAAAGTCAAGAATTCAACTATTACCCTCAAAATCCAAAAGTGCTTCTACCACCTGCAATAGGTTATAGAAGGAACCAAGCTGAGAAAGTTATGTCAAATGGCATGTCAAATAGTATCTGCAATAATCCATTGGTATATAATGAAAACAACATGCAAAAGAGAATCTCTGATTATGAAACGTTGGATTTGTTTCCTCTGCATCCAACTGGCATATTGGAaggaaaaacaacaaacaacaatgtGTCTTCTATTGTTTCAGTTTCTGCTGATAGTTCCACTGATGATACTCATCATTCTGGTTCTCCTCATTATGTTATCAATCAAGATGGTGGTTGTCATGAAAATCAACCTTTCTTTGACTTTTTTAATAATTCTGCAGGACATCGTTATTAA 741 0.336 MESENNDINGISSGSSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQDNMAYFNRLLHRPNPIFPSPPIYPNAICTQYCVQQPQSQEFNYYPQNPKVLLPPAIGYRRNQAEKVMSNGMSNSICNNPLVYNENNMQKRISDYETLDLFPLHPTGILEGKTTNNNVSSIVSVSADSSTDDTHHSGSPHYVINQDGGCHENQPFFDFFNNSAGHRY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02081 246 CDD homeodomain 18 78 IPR001356 GO:0003677
Tsu02g02081 246 SMART HOX_1 14 81 IPR001356 GO:0003677
Tsu02g02081 246 SUPERFAMILY Homeodomain-like 12 81 IPR009057 -
Tsu02g02081 246 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g02081 246 Pfam Homeodomain 16 76 IPR001356 GO:0003677
Tsu02g02081 246 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 243 IPR044555 GO:0003700|GO:0099402
Tsu02g02081 246 Gene3D - 16 84 - -
Tsu02g02081 246 ProSiteProfiles 'Homeobox' domain profile. 12 77 IPR001356 GO:0003677
Tsu02g02081 246 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 3 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02081 Tsu-Chr2 20269064 20270636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02081 6 242 Wox Gene Family AT5G59340 40.755 1.90e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu02g02081 Homeodomain 4.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02081 - - pvu:PHAVU_011G064900g 262.307