Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02065 ATGCGCATAGCCACCATAGTGAATAGTAAAactcttcttctccaaaattCAGCCTTACTCTTACCTCAATTGTTGCTATGCGTGCGCCATCATTCAACAACCAAATTATTCCTCGCAGGGCTTTCCTATAATACAAATGAAACAGTCTTGAGAGACACCTTTAAACAACATGGGCAAATCATTGAAgTTAAAGTAATATGTGACCATAAAACTGGGGAATCAAAAGGGTATGGATTTGTTAGGTTCAATTCTGAAATTGCAGCTACCTCAGCTCGTAAAGAATTGCACCGCCAGATAGTGGACGGTAGACGCATTCGAGTGGGTTATGCACACAAAGGGTAA 342 0.386 MRIATIVNSKTLLLQNSALLLPQLLLCVRHHSTTKLFLAGLSYNTNETVLRDTFKQHGQIIEVKVICDHKTGESKGYGFVRFNSEIAATSARKELHRQIVDGRRIRVGYAHKG 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02065 113 SUPERFAMILY RNA-binding domain, RBD 18 112 IPR035979 GO:0003676
Tsu02g02065 113 SMART rrm1_1 35 108 IPR000504 GO:0003723
Tsu02g02065 113 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 8 112 - -
Tsu02g02065 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Tsu02g02065 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 112 - -
Tsu02g02065 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Tsu02g02065 113 Gene3D - 24 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02065 Tsu-Chr2 20097776 20098830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02065 34 112 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 2.67e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02065 K13195 - gmx:100306540 142.51