Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02064 ATGTCTGCCGCTCTCGATATGACCCTTGACGATATCAtcaagaacaacaaaaaatctGGATCCGGAAACCCTAGAGGCCGTTCTAGACCCGGACCCGGATCCGGACCTGGTCCCGCTCGCCGTTTACCTAATCGCGCCGTTAACCGCTCTGCACCTTACTCCGCTCCTAAGgcGCCTGAGACGACGTGGCAGCATGATTTGTATGGAGATCAACATGTGGCTGCGGCTGCGTTTCCTGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACTGGAACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAATGATGATATAAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACTGCAGAAGTAGTCTTCTCACGgcgacaagatgctgtagctgCTGTAAAGAGATACAACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGCGGCTCCTGTTGTAAATGCACCTATTGGAAATTTTAATGCAGTTCCTCAAAGTGGGCAAGGAAGAATTGGAGATTTACGAGGGCCTGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGAGGTCGTGGTGGTGGTCGTGGTGGAGGTCGCGGTAGAGGTCGTGACGAAAAGGTATCTGCAGAAGACCTTGATGCTGAGCTAGAGAAGTATCATGCAGAGGCCATGCAAATAAACTAA 786 0.4656 MSAALDMTLDDIIKNNKKSGSGNPRGRSRPGPGSGPGPARRLPNRAVNRSAPYSAPKAPETTWQHDLYGDQHVAAAAFPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAPIGNFNAVPQSGQGRIGDLRGPGGRGQGIRRNRGRGRGSGGGRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQIN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02064 261 MobiDBLite consensus disorder prediction 231 246 - -
Tsu02g02064 261 Pfam C-terminal duplication domain of Friend of PRMT1 205 255 IPR025715 -
Tsu02g02064 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Tsu02g02064 261 SUPERFAMILY RNA-binding domain, RBD 18 166 IPR035979 GO:0003676
Tsu02g02064 261 SMART rrm1_1 93 165 IPR000504 GO:0003723
Tsu02g02064 261 SMART FoP_duplication_2 191 261 IPR025715 -
Tsu02g02064 261 Gene3D - 80 245 IPR012677 -
Tsu02g02064 261 MobiDBLite consensus disorder prediction 1 60 - -
Tsu02g02064 261 Coils Coil 243 261 - -
Tsu02g02064 261 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 260 - -
Tsu02g02064 261 MobiDBLite consensus disorder prediction 191 246 - -
Tsu02g02064 261 CDD RRM_THOC4 92 166 - -
Tsu02g02064 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Tsu02g02064 261 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02064 Tsu-Chr2 20093082 20097133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02064 91 220 Eukaryotic Initiation Factors Gene Family AT1G71770 28.188 2.79e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02064 K12881 - gmx:100775827 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02064 02 20093082 20097133 Tsu02g02064 02 20093082 20097133 ECH