Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02060 ATGGATCAACAATACTATTGCAGGGCATATCCTCGTATGCCTTCCAATTCTATCAACACACAAAATTTGTCATCTGACAAATATTTCAATATCCAATTTGAATACAGAGTTCTAGGTGTTGCTGGGACTATTGAAGATATTCAACGTCACACTTTTAATCATGTCTCCATGGCTAAAATTGTGCAAGAAGATACTTTTCCGTCTTTGTTTTCTCAGATAAATATTCCTGTTGATGCTTATACATCGGTGGCTGAAGAAATATCAGAATGCGCTTATGATATGGTTTATGATGACAAATACAAGAATCTAAGTGTTTTGACTATTCAAGTTGAGTTTGTGGTCACTAGGTCAACTGAAGATGAAGGGAACCCTAGTTTTgaagaggttgaagatgaaagtGACGATGAAGATGATTATGGTTTGGAAGAGGACATGATGGCTGAAGAACATAATTGGTTTACTCCTGCAGCTAAGTCATGTGTTGATGAATTGGATAAGGTAAATGTTGAAGAAGCCACACGATGTACCGTTTGTTTCGAAGATGTTAACAATGGTGTTCGACTGCCATGTTCACATATCTTTCATGTGAATTGCATTCAAGATTGGTTGATGATAGGCAGCTGTTGTCCTATGTGTAGGTTTCAGTTACCTACTTGTAGCACAAGTGAATAA 672 0.3586 MDQQYYCRAYPRMPSNSINTQNLSSDKYFNIQFEYRVLGVAGTIEDIQRHTFNHVSMAKIVQEDTFPSLFSQINIPVDAYTSVAEEISECAYDMVYDDKYKNLSVLTIQVEFVVTRSTEDEGNPSFEEVEDESDDEDDYGLEEDMMAEEHNWFTPAAKSCVDELDKVNVEEATRCTVCFEDVNNGVRLPCSHIFHVNCIQDWLMIGSCCPMCRFQLPTCSTSE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02060 223 Pfam Ring finger domain 174 213 IPR001841 -
Tsu02g02060 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 216 IPR013083 -
Tsu02g02060 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 218 - -
Tsu02g02060 223 ProSiteProfiles Zinc finger RING-type profile. 175 213 IPR001841 -
Tsu02g02060 223 SMART ring_2 175 212 IPR001841 -
Tsu02g02060 223 PANTHER F6A14.12 PROTEIN-RELATED 49 218 - -
Tsu02g02060 223 SUPERFAMILY RING/U-box 174 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02060 Tsu-Chr2 20062969 20063640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02060 137 218 C3H Transcription Factor Family AT5G01980 35.789 2.12e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02060 - - cam:101499491 191.045