Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02051 ATGAAGAGAGTGAGTAATGAGGTTTTTAAGTGCAAAACATGTAATAAAGTTTTCCTTTCATTTCAAGCTCTTGGGGGACATAGGGCAAGTCACAATAAGCTTAAGGTAATGACCAAAAACCTTTCCTTAAGAACAAATATGAAGCACAAGATGCATATGTGTACTATTTGTGGGCTTCAATTTGCAATTGGACAAGCTCTTGGAGGACACATGAGAAAACATAGAGCAGGACCAGTTCATGATCCTAAAAGATTTCGTTTTTGCTTGGATTTGAACTTGACACCCTACGAGAATGATCTTAAGGAGcttaacctttttttctttgagGCATTAAGTTCATCCTATCATCCCCTAAATGAGAAAAAGATCGAGTGCTCCTCACACACCCTATTCCTCTCTTTCTCCCTTCTCTGCCGTCGTCAAGATCTCCGGTTAGGGTTCCGATCATCTCCGAATCTACAGATCCTGAAACCTTCCCGATCCTTCTATACTATCAAATTTTTCACCATTTTTCAAGGATTTGTTTATCACTTGAATTCAACAACAAAACTATAG 555 0.3748 MKRVSNEVFKCKTCNKVFLSFQALGGHRASHNKLKVMTKNLSLRTNMKHKMHMCTICGLQFAIGQALGGHMRKHRAGPVHDPKRFRFCLDLNLTPYENDLKELNLFFFEALSSSYHPLNEKKIECSSHTLFLSFSLLCRRQDLRLGFRSSPNLQILKPSRSFYTIKFFTIFQGFVYHLNSTTKL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02051 184 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Tsu02g02051 184 SUPERFAMILY beta-beta-alpha zinc fingers 8 74 IPR036236 -
Tsu02g02051 184 Gene3D Classic Zinc Finger 7 74 - -
Tsu02g02051 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Tsu02g02051 184 PANTHER ZINC FINGER PROTEIN ZAT5 5 82 - -
Tsu02g02051 184 SMART c2h2final6 9 31 IPR013087 -
Tsu02g02051 184 SMART c2h2final6 52 74 IPR013087 -
Tsu02g02051 184 Pfam C2H2-type zinc finger 8 33 - -
Tsu02g02051 184 Pfam C2H2-type zinc finger 52 76 - -
Tsu02g02051 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Tsu02g02051 184 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Tsu02g02051 184 PANTHER OS03G0279700 PROTEIN 5 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02051 Tsu-Chr2 20017405 20020540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02051 6 100 C2H2 Transcription Factor Family AT3G53600 50.000 5.16e-27 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g02051 zf-C2H2_6 4.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02051 - - gmx:112998408 131.339