Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02049 ATGACAACTCAAGAAGAAAGACTTGTTATGGAGCTTCATTCTAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAATTACCGGGAAGAACAGATAATGAGATTAAGAATTACTGGAGAACACACATGAGGAAGGTGAGGGCACAAGAGAAAAAACATGCAACACCTTCAACAATTTCATCACCTGATCAATCTTCTAGTTGTCAATCCTCACTTTTCTCAAACAATAATCATGCTGTGGATTCACATGGTTCCTACCAAGAAGTTGGTGAAGAAAATTACCAAGTTCAAGAAATTGTTGAGGGGTACTCAATGGATGATATTTGGAAAGATATTGCTATGTCAGAAGATGACATTAATAGTCTTCAACCTGTTTATGATGGACATAGTGAAGAAAATTGCAACTTTTCTGGTCCTATAATGCCTTCTACATCATCATGGGATTATTCTAATTTAGATCCATTGTGGGTGATGGATGAAGAAGAAAGCAAGATGTTATTCCCTCCTATTGGTGATCAATATTTTTCCTTCTATGATCAACAAGGGAATACATTTCTAACTGGCTAA 567 0.3598 MTTQEERLVMELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKVRAQEKKHATPSTISSPDQSSSCQSSLFSNNNHAVDSHGSYQEVGEENYQVQEIVEGYSMDDIWKDIAMSEDDINSLQPVYDGHSEENCNFSGPIMPSTSSWDYSNLDPLWVMDEEESKMLFPPIGDQYFSFYDQQGNTFLTG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02049 188 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 178 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu02g02049 188 MobiDBLite consensus disorder prediction 46 72 - -
Tsu02g02049 188 MobiDBLite consensus disorder prediction 53 72 - -
Tsu02g02049 188 CDD SANT 1 43 IPR001005 -
Tsu02g02049 188 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Tsu02g02049 188 Gene3D - 2 44 - -
Tsu02g02049 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Tsu02g02049 188 SMART sant 1 45 IPR001005 -
Tsu02g02049 188 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Tsu02g02049 188 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Tsu02g02049 188 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02049 Tsu-Chr2 19979428 19981789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02049 1 177 MYB Transcription Factor Family AT3G46130 46.632 6.73e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g02049 Myb_DNA-binding 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02049 K09422 - gmx:100776886 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02049 02 19979428 19981789 Tsu02g02049 02 19979428 19981789 ECH
Tsu02g02049 02 19979428 19981789 Tsu02g05160 02 60639875 60641598 PCT