Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02044 atgcCGATTTCTAGAATTGCTATTGGAAGTCCTTCTGAGTTTGGCAAAGCTGATGCACTTAGGGCAACACTTGCTGAGTTCATCTCAATGCTTATCTTTGTCTTTGTAGGGGAAGGCTCTGGCATGGCATATAataaGCTAACCAACAATGGTGCAGCAACACCAGCTGGGTTGGTAGCAGCCGCACTATCACATGCTTTTGCTCTTTTTGTTGCTGTCTCTGTTGGTGCTAACATTTCTGGTGGACATGTTAACCCTGCTGTCACTTTTGGTGCATTCATTGGTGGACACATTACACTCATTAGAGGCCTTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGTTTGCTCCTTAAATTTGCCACTGGTGGATTGGAAACATCTGCATTCTCATTATCTTCAGGGGTGGGAGCAACAAATGCACTTGTGTTTGAGATTGTTATGACTTTTGGTTTGGTTTACACAGTTTATGCTACTGCAGTAGACCCAAAAAATGGTAGCCTAGGAACAATTGCTCCAATTGCTATTGGTTTCATTGTAGGAGCCAACATCTTGGTAGGTGGGGCCTTTGATGGTGCTTCCATGAACCCAGCAGTGTCTTTTGGGCCTGCTATCGTTAGCTGGACATGGACCAATCACTGGGTCTATTGGGTCGGACCGTTGATTGGTTCTGCTATTGCAGCAGTTGTCTATGAAATTTTCTTCATCACCCCTAGCTCTTATGAACAGTTACCTGTCACAGATTATTAA 759 0.4361 MPISRIAIGSPSEFGKADALRATLAEFISMLIFVFVGEGSGMAYNKLTNNGAATPAGLVAAALSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLIRGLLYWIAQLLGSVVACLLLKFATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAIVSWTWTNHWVYWVGPLIGSAIAAVVYEIFFITPSSYEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02044 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Tsu02g02044 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Tsu02g02044 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Tsu02g02044 252 SUPERFAMILY Aquaporin-like 18 243 IPR023271 -
Tsu02g02044 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g02044 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02044 Tsu-Chr2 19914741 19916900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02044 1 252 Major Intrinsic Protein MIP AT2G36830 79.365 4.63e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02044 K09873 - gmx:100777419 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02044 02 19914741 19916900 Tsu02g02044 02 19914741 19916900 ECH