Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02034 ATGGAGAGGTCCAACGATTTTATTCCTGTTTATTTGTGCAGTGGAGAGGTCCAACGAGCAATTCCTGTTTTACATAAAGCATATGAAGATAGCATGCATAATGGTCCTAATACTTGCTATGTGGTCTCTAAATTACAAAAGGAGGATGAAACTGAAGCTTGGGAACCCGGTGGATCAGGTTCCAAAACGTCCAAACAGTTTATCCACGTGGCACAATTTGATTGGCAAATTTTCCGTGCCAGACGAGAATTTCATCGCACACAAAACCGCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAATATCCAAAAGGAGTCCACGCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTAGAGAGTTCTGACACCATAGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTGATTTTTGCGGGAAAACAGCTCGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAAACTCTTACCGGTAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGAATTCCCCCGGATCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTGGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTAGAAAGTTCAGATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATGTTAA 1194 0.4539 MERSNDFIPVYLCSGEVQRAIPVLHKAYEDSMHNGPNTCYVVSKLQKEDETEAWEPGGSGSKTSKQFIHVAQFDWQIFRARREFHRTQNRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02034 397 PRINTS Ubiquitin signature 103 123 IPR019956 -
Tsu02g02034 397 PRINTS Ubiquitin signature 124 144 IPR019956 -
Tsu02g02034 397 PRINTS Ubiquitin signature 145 166 IPR019956 -
Tsu02g02034 397 PANTHER UBIQUITIN 168 374 - -
Tsu02g02034 397 ProSitePatterns Ubiquitin domain signature. 271 296 IPR019954 -
Tsu02g02034 397 Pfam Ubiquitin family 323 394 IPR000626 GO:0005515
Tsu02g02034 397 Pfam Ubiquitin family 95 166 IPR000626 GO:0005515
Tsu02g02034 397 Pfam Ubiquitin family 247 318 IPR000626 GO:0005515
Tsu02g02034 397 Pfam Ubiquitin family 171 242 IPR000626 GO:0005515
Tsu02g02034 397 PANTHER UBIQUITIN 87 299 - -
Tsu02g02034 397 CDD Ubl_ubiquitin 93 168 - -
Tsu02g02034 397 CDD Ubl_ubiquitin 245 320 - -
Tsu02g02034 397 Gene3D - 321 397 - -
Tsu02g02034 397 Gene3D - 169 244 - -
Tsu02g02034 397 Gene3D - 84 168 - -
Tsu02g02034 397 Gene3D - 245 320 - -
Tsu02g02034 397 PANTHER UBIQUITIN 302 396 - -
Tsu02g02034 397 ProSitePatterns Ubiquitin domain signature. 195 220 IPR019954 -
Tsu02g02034 397 SUPERFAMILY Ubiquitin-like 244 320 IPR029071 -
Tsu02g02034 397 PANTHER UBIQUITIN 13 168 374 - -
Tsu02g02034 397 SMART ubq_7 321 392 IPR000626 GO:0005515
Tsu02g02034 397 SMART ubq_7 93 164 IPR000626 GO:0005515
Tsu02g02034 397 SMART ubq_7 169 240 IPR000626 GO:0005515
Tsu02g02034 397 SMART ubq_7 245 316 IPR000626 GO:0005515
Tsu02g02034 397 SUPERFAMILY Ubiquitin-like 320 396 IPR029071 -
Tsu02g02034 397 PANTHER UBIQUITIN 13 87 299 - -
Tsu02g02034 397 ProSitePatterns Ubiquitin domain signature. 347 372 IPR019954 -
Tsu02g02034 397 ProSitePatterns Ubiquitin domain signature. 119 144 IPR019954 -
Tsu02g02034 397 CDD Ubl_ubiquitin 169 244 - -
Tsu02g02034 397 SUPERFAMILY Ubiquitin-like 88 168 IPR029071 -
Tsu02g02034 397 ProSiteProfiles Ubiquitin domain profile. 169 244 IPR000626 GO:0005515
Tsu02g02034 397 ProSiteProfiles Ubiquitin domain profile. 93 168 IPR000626 GO:0005515
Tsu02g02034 397 CDD Ubl_ubiquitin 321 396 - -
Tsu02g02034 397 ProSiteProfiles Ubiquitin domain profile. 321 396 IPR000626 GO:0005515
Tsu02g02034 397 PANTHER UBIQUITIN 13 302 396 - -
Tsu02g02034 397 SUPERFAMILY Ubiquitin-like 168 244 IPR029071 -
Tsu02g02034 397 ProSiteProfiles Ubiquitin domain profile. 245 320 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02034 Tsu-Chr2 19786714 19789249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02034 321 396 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 5.12e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02034 K08770 - han:110936586 594.349