Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02018 ATGTCTTCATCGTTTGTGTATAAAGTAGCTACTAAACAAAATCCCTGGGAAGAAATATTATGTGAATATCGAGGGGAATTGGACTTCAGTCATTTGAAATCAACAAGTGATAGGAACCCAACCTTTGTGATTGGAGATCCCATGAATAAGGTTCATAAGGATATGATTCATATCTGGGAAGGACCTGTTGAATCCTGGGGGATTTGCGCTTATGAGGCGGATAAATCCTTAAGGACAGTGTATGAGGCGGATAAATCCTTACTGATTTACTATTTTGCAGGTCCAATTTTCACAACAGCCAATGAACTTAGCAACACCATGGTGCAACAAGAGAGTCATCACAATGGCCTAGAGTCGAACAAGAACGTTAAAAAGAAGAACTATAGAGGCGTAAGGCGTAGACCGTGGGGGAAATATGCAGCAGAGATTCGTGACTCGACGCGTAATGGAGCTAGGATATGGCTTGGTACATTTCAAACAGCTGAAGAAGCTGCAATTGCTTATGACAAAGCTGCTTTTAGAATGAGGGGGGCTAAGGCTATGCTAAATTTACTCTGA 558 0.4158 MSSSFVYKVATKQNPWEEILCEYRGELDFSHLKSTSDRNPTFVIGDPMNKVHKDMIHIWEGPVESWGICAYEADKSLRTVYEADKSLLIYYFAGPIFTTANELSNTMVQQESHHNGLESNKNVKKKNYRGVRRRPWGKYAAEIRDSTRNGARIWLGTFQTAEEAAIAYDKAAFRMRGAKAMLNLL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02018 185 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 104 183 - -
Tsu02g02018 185 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 SMART rav1_2 127 184 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 PANTHER DNA-BINDING DOMAIN 104 183 IPR044808 GO:0003700|GO:0009873
Tsu02g02018 185 Gene3D AP2/ERF domain 126 185 IPR036955 GO:0003700|GO:0006355
Tsu02g02018 185 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Tsu02g02018 185 SUPERFAMILY DNA-binding domain 127 184 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02018 Tsu-Chr2 19680253 19681901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02018 125 184 AP2-EREBP Transcription Factor Family AT3G23240 76.667 3.95e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu02g02018 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02018 K13433 - gmx:100811533 121.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02018 02 19680253 19681901 Tsu02g02018 02 19680253 19681901 ECH