Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02015 ATGGTCCGGTCCAACAAACATTGGCCTAGCTTGTTCAAGAGGTCCACTTATCAGAGTTCGCAACATGGCATCAACTCCCCCATCACCGGTGGTGATAATGATGAGAGAACTTCACAACCACCAAAGCCAAGATGGATTGCAACACCAGAGCAAGTCCAAATTCTTGAAAACATCTTCAACTCAGGGATTATGAACCCTCCAAGGgatgaaattaagaaaatacGTGAAAAGTTACAAGAATATGGTCCAATTGGTGATGTAAATATTTTCTACTGGTTTCAAAACCGCAAAGCAAGGAATAAACATAAACTACCACAACCCAACATTATGAAtattccaagaaaaagaagaagcaaaaaCTATCAAACCATCACAATACCTCTTGATTCAGCTTCATCATCTTCCTCTCATTATCAAAATGTATCTTCCAATGAAATAGTGGTACCTAATAATATTGAATTAACCACTAAAAATAGGGTGGTTAATTTCACTAATGATTCCCCTAATGATACAAATACAATCTTTGGGAACCAAAACCTAGCTACTGATTATTTTCAAACTCCCATTCGACCTGATTTTCTACTATCTACACCCCCTTTGTTCTCTTTTCCTGGTCAGTTCTCTAATATGACTCAGCAGTATGATCAAGGGAATATCTTAGATCAGCAAGTTGCAATGAGTATGATGcatcagcagcaacaacaacaagaatTTCCACAACTGATGAGTTCTGGTGTGACTTCAATGAATATGATGCAGCAGCAGCagctacaacaacaacaacaacaacaagttTCACATGTGATGAGTTCAGGTGTGACTTCAAATTCActcaatgatgatgatgattcagCTCTTCCTCCTCTTCCTCCAATTATCATTGATGCACCTGTTGTTGATCCATTCTCCATCACTCAATTTCAAGGTGTTGCTGAGCCGGATTATTTTAGGGCAAAATGTACGGTGAGTATTAACAACGAGATAGTTGAGGTTGATGCGGGGCCATTTAACATCCGCCAAATTTTTGGAGATGGAGCTGTTCTCTTTGACTCCTCCGGCCAAATTGTTCTCACCGACGAGTGGGGTGTAACTCTTAACTCACTCCAACATGGTGCTTCTTATTTTCTGAAAGAATATTGTGGAGCAAAAGGCTCAGCAGCATCCTTTCCTCTAGCTTTATGTTGTGGAGGCTTGTTGATCAGTTTCTTATATTATATGTAG 1221 0.3612 MVRSNKHWPSLFKRSTYQSSQHGINSPITGGDNDERTSQPPKPRWIATPEQVQILENIFNSGIMNPPRDEIKKIREKLQEYGPIGDVNIFYWFQNRKARNKHKLPQPNIMNIPRKRRSKNYQTITIPLDSASSSSSHYQNVSSNEIVVPNNIELTTKNRVVNFTNDSPNDTNTIFGNQNLATDYFQTPIRPDFLLSTPPLFSFPGQFSNMTQQYDQGNILDQQVAMSMMHQQQQQQEFPQLMSSGVTSMNMMQQQQLQQQQQQQVSHVMSSGVTSNSLNDDDDSALPPLPPIIIDAPVVDPFSITQFQGVAEPDYFRAKCTVSINNEIVEVDAGPFNIRQIFGDGAVLFDSSGQIVLTDEWGVTLNSLQHGASYFLKEYCGAKGSAASFPLALCCGGLLISFLYYM 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02015 406 SMART HOX_1 40 107 IPR001356 GO:0003677
Tsu02g02015 406 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 IPR044557 GO:0003700|GO:0050793
Tsu02g02015 406 CDD homeodomain 41 103 IPR001356 GO:0003677
Tsu02g02015 406 SUPERFAMILY Homeodomain-like 37 104 IPR009057 -
Tsu02g02015 406 MobiDBLite consensus disorder prediction 1 36 - -
Tsu02g02015 406 Gene3D - 34 102 - -
Tsu02g02015 406 Pfam Homeodomain 42 102 IPR001356 GO:0003677
Tsu02g02015 406 MobiDBLite consensus disorder prediction 1 44 - -
Tsu02g02015 406 ProSiteProfiles 'Homeobox' domain profile. 38 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02015 Tsu-Chr2 19650989 19654065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02015 1 104 Wox Gene Family AT2G33880 54.310 1.10e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu02g02015 Homeodomain 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02015 - - mtr:MTR_7g025010 261.536