Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02012 ATGGGTTCATCGAACAAACATTGGCCTAGCATGTTCAAGAAGTCCAACTATCACAATTCGCAGCATGGCATCAACACCTCACTCTTATCTACCGgttGTCATGGTGATGAGAGAACTCCAGAACCAAAACCAAGATGGAATCCAAAACCAGACCAAATCAGAATTCTTGAAGCTATCTTCAACTCAGGGATGATGAACCCTCCAAGGGAAGAGATTAAGAAAATACGTGAACAATTACAAGAGTATGGCCCAATTGGTGAAGCTAATGTCTTCTATTGGTTCCAAAATCGCAAATCAAGGAGCAAGAATAAGCATAAACAAAGACATCCCAACAATAGAAATcttgcaaaaagaaaaatccaaaacTCTTCAGTTCCTAATAATAATTCCTTAATCTCAACTCAAACCATCACAACACCTCTTAGTTCATCCTCTCATCATCAAAATGAAATAGTGGTACCAAATAATATTGAAACTGATTTTCAACTACCTACACCCacttttttctctttccctAATGAGTTCTCTAATATGACTCAGCAGTTGCCTCAACAAAATGTTGATGTACCTGATTTGCTTAATCATGAGATCTTTATgaaatgtgaaaataaaatcCCAATGAATGAGCACTATGATCAAGGGATTATCCAAGATCATGAAGCTGCAATGAATATCAATTTAGGTGTGACTTCAAATTCACTCAATGATGATTCAACTCTTCCTTCTCATCCTCCCATTGTCAATGCACATTTTACCGATCCATTCTCCATTACTCAATTTCAAGGTGTTGGTGAGGCAGAAGATTTTACAGAAAAATGCATTGTGAGTATTAACAACCACATATTCAAGGTTAACGTTGGACCTTTTAACATTTGTCAAATTTTTGGAGATGAAGCTGTTCTTGTTGACTCCTCTGGCCAAACTATTCTCACCGACGAGTGTGGTATAACACTTGAGTCACTCCAACATGGTGCTTCTTATTACGTGGTTTGA 993 0.3555 MGSSNKHWPSMFKKSNYHNSQHGINTSLLSTGCHGDERTPEPKPRWNPKPDQIRILEAIFNSGMMNPPREEIKKIREQLQEYGPIGEANVFYWFQNRKSRSKNKHKQRHPNNRNLAKRKIQNSSVPNNNSLISTQTITTPLSSSSHHQNEIVVPNNIETDFQLPTPTFFSFPNEFSNMTQQLPQQNVDVPDLLNHEIFMKCENKIPMNEHYDQGIIQDHEAAMNINLGVTSNSLNDDSTLPSHPPIVNAHFTDPFSITQFQGVGEAEDFTEKCIVSINNHIFKVNVGPFNICQIFGDEAVLVDSSGQTILTDECGITLESLQHGASYYVV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02012 330 MobiDBLite consensus disorder prediction 99 129 - -
Tsu02g02012 330 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Tsu02g02012 330 ProSiteProfiles 'Homeobox' domain profile. 39 104 IPR001356 GO:0003677
Tsu02g02012 330 MobiDBLite consensus disorder prediction 1 33 - -
Tsu02g02012 330 MobiDBLite consensus disorder prediction 36 50 - -
Tsu02g02012 330 SMART HOX_1 41 108 IPR001356 GO:0003677
Tsu02g02012 330 MobiDBLite consensus disorder prediction 1 50 - -
Tsu02g02012 330 MobiDBLite consensus disorder prediction 99 115 - -
Tsu02g02012 330 SUPERFAMILY Homeodomain-like 37 108 IPR009057 -
Tsu02g02012 330 Gene3D - 43 109 - -
Tsu02g02012 330 CDD homeodomain 42 105 IPR001356 GO:0003677
Tsu02g02012 330 Pfam Homeodomain 43 103 IPR001356 GO:0003677
Tsu02g02012 330 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 330 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02012 Tsu-Chr2 19611266 19615471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02012 1 330 Wox Gene Family AT5G45980 37.815 2.80e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu02g02012 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02012 - - mtr:MTR_7g025010 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02012 02 19611266 19615471 Tsu02g02012 02 19611266 19615471 ECH