Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01996 ATGGCTTTGAGTACAAATGGTTCTGAAGAAAGTGAACTGTATCATGCTCAAATTCATTTGTACAAACATGTATACAACTTTGTAAGTTCCATGGCACTTAAATCTGCTATGGAACTTGGCATAGCTGATGCAATCCATAACCATGGAAAACCAATGACTCTTACTGAATTAGCTTCATCTTTGAAACTACACCCTTCTAAAGTTAACATCCTCTATCGATTTTTGCGCCTGTTAACACACAATGGTTTCTTTGTAAAAACAACAGTGAAAAGCAACGAAggtgagaaagaagaagatataGCATATTCTCTTACaccatcttcaaagcttctcataagtggGAAATCAACATGTTTATCATCACTTATTAAAGGAGCACTTCATCCAAGTTCTATAGACATGTGGAGCTCTTCAGAGAAATGGCTCAAGGAGGATAAGGAACAAACTTTGTTTGAGTGTGCAAAAGGGGAGAATTATTGGGATTTTCTTAACAGAGATTCTGATACATTGAATATGTTTCAAGATGCTATGGCTGCTGATTCTAGAATGTTTAAGCTTGCTCTTAAAGAGAACAAACATGTGTTTGAGGGTTTGGAGTCTCTTGTTGATGTGGCTGGTGGAACTGGTGGTGTCACAAAACTCATTCATGAAGCTTTTCCTAACATCAAATGCACTGTTTTTGATCAACCACAAGTTGTTGGTAACTTAACCGGAAATGAAAATTTGAACTTTGTTGGTGGTGATATGTTCAAATCCATCCCTCCTGCAGATGCTGTTTTACTCAAGTGGGTTCTTCATGATTGGAATGATGAACTATCCTTGCAAATATTGAAGAACAGCAAAGAAGCTATTTCTCACAAAGGAAAAGATGGAAAAGTGATTATTATCGACATATCGATTGATGAAACAAGTGATGATCATGGATTAACTGAGTTGCAATTGGAATATGATTTAGTGATGCTTACAATGTTTCTTGGTAAAGAAAGAACAAAGACAGAATGGGACAAACTCATACACGATGCAGGTTTCAGTAGCTACAAAATTATCCCTATAAGTGGCTTCAAGTCTCTAATTGAAGTTTATCcttga 1089 0.3453 MALSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLTELASSLKLHPSKVNILYRFLRLLTHNGFFVKTTVKSNEGEKEEDIAYSLTPSSKLLISGKSTCLSSLIKGALHPSSIDMWSSSEKWLKEDKEQTLFECAKGENYWDFLNRDSDTLNMFQDAMAADSRMFKLALKENKHVFEGLESLVDVAGGTGGVTKLIHEAFPNIKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPPADAVLLKWVLHDWNDELSLQILKNSKEAISHKGKDGKVIIIDISIDETSDDHGLTELQLEYDLVMLTMFLGKERTKTEWDKLIHDAGFSSYKIIPISGFKSLIEVYP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01996 362 Pfam O-methyltransferase domain 135 344 IPR001077 GO:0008171
Tsu02g01996 362 PANTHER O-METHYLTRANSFERASE 5 362 IPR016461 GO:0008168
Tsu02g01996 362 PIRSF O-mtase 1 362 IPR016461 GO:0008168
Tsu02g01996 362 Gene3D - 8 111 IPR036388 -
Tsu02g01996 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 361 IPR029063 -
Tsu02g01996 362 SUPERFAMILY "Winged helix" DNA-binding domain 10 115 IPR036390 -
Tsu02g01996 362 Gene3D Vaccinia Virus protein VP39 112 362 IPR029063 -
Tsu02g01996 362 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 5 362 - -
Tsu02g01996 362 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tsu02g01996 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 362 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01996 Tsu-Chr2 19375478 19376759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01996 28 360 Monolignol Biosynthesis Gene Families AT5G54160 33.815 4.63e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01996 K22588 - ag:AAC49856 633.254