Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01992 GGCAGCCACGGAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAGCTTGTATCTGGAGACGTTGTTCTGTTCCTCAGGGGAGAGGATGGAGATTTGAGATTGGGAGTCCGTAGGGCGGCTCAATTGAAAAGCAGCAGTAACTTTTCATCTATCTCTGGCCAGCAATTGAATCCTGGAAGCCTTACGGATATAGTTAACGCTTTATCAACTAGATTGTTTTCAATACTTTTACTGTTTCATTGTAGGATTGGTTCGTCCGAGTTCATCATACCTATGCACAAATTCTTAAAGAGCCTGGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGcgttttgaatttgaagatgTTGCAGAGGGAAGATTCACAGGATTAATTATTGGAATTACTGACGTGGATCCTGTCAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACTCGGAGGCTTCAAGGCTTAACAGGGTTTCTCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATACCTTGATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTGCCTTTATCAAAGCTTGAATTTCCAGTTCCGAGTGGAACAGGGACATCAGACTTTAGTGAATCACTGCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTAGGCGTTAATACTACTTTCGATAGTATTAGTGCTCAGAGTCACCACCAATTATCTGAATTACAAAGGTGCTATTCCGGTTCAAACTATCCCGGGATTGCATCAACAGGAAATAGCATCAGAATCCCTCAAATGAATTCTGATGTTTCCTGCAATGGCTTCAACGAATCATTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGCAAGATCCTTGTCTGTTGACGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCCCCAAGTACTGAGATCAAGAAATGGATGGTCTTCTCAGATGAATAACAACTTGCATTTCTATCCATCAGCATTAATGGACCAGCAAAGAGACAATCCAGTTTTGAACTTGGATtacaataacaaaatttatCCGGTGATGGAGGATAATGTCCACCAAAGAGGTTCATATGTTTTTGAAGTGAAAGTTGGTGCATTTGCATCAACCCCATCCTACAAGCCTATTTTCCGCGGACTAGCTCATGAAGACACAAATTCATTCAGTACACATTTGCATGATTCGGTTTCACTACCAAGAAGCGGTTAA 1277 0.419 QPRRHLLTTGWSAFVNKKKLVSGDVVLFLRGEDGDLRLGVRRAAQLKSSSNFSSISGQQLNPGSLTDIVNALSTRLFSILLLFHCRIGSSEFIIPMHKFLKSLDYSYSVGMRFRMRFEFEDVAEGRFTGLIIGITDVDPVRWPGSKWKCLVVRWDDSEASRLNRVSPWEIEPSGSASTTNTLMAASLKRTKIGLPLSKLEFPVPSGTGTSDFSESLRFQKVLQGQEMLGVNTTFDSISAQSHHQLSELQRCYSGSNYPGIASTGNSIRIPQMNSDVSCNGFNESFRFQKVLQGQEILPSQPYARSLSVDEACRNGRFGLFDGHPQVLRSRNGWSSQMNNNLHFYPSALMDQQRDNPVLNLDYNNKIYPVMEDNVHQRGSYVFEVKVGAFASTPSYKPIFRGLAHEDTNSFSTHLHDSVSLPRSG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01992 424 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 409 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g01992 424 PANTHER AUXIN RESPONSE FACTOR 1 409 - -
Tsu02g01992 424 Gene3D - 1 44 IPR015300 -
Tsu02g01992 424 SUPERFAMILY DNA-binding pseudobarrel domain 2 43 IPR015300 -
Tsu02g01992 424 Pfam Auxin response factor 82 150 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g01992 424 Gene3D - 106 180 - -
Tsu02g01992 424 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01992 Tsu-Chr2 19277927 19336270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01992 1 299 B3 DNA Binding Superfamily AT2G33860 47.176 4.60e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01992 K14486 - gmx:100808119 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01992 02 19277927 19336270 Tsu02g01992 02 19277927 19336270 ECH