Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01980 ATGGAGTCACGAGTGTTGTCACGCGCCACCACTCTCTCCTCCTTACCTCGTCTTAACAAATTTCATCGGGAACATATCGCCACCAATGCTTCACTCCTTTCCGTGAAATCGATCGGATCAGTTTCAGATGGCGGGAACCTTGTTTGGGGAAGACAACTTCGTCCGGAGTTGTGTTCACCGGCGATTAAGAAAGGTTCTGTGTTACTCCGTCCTTGTCTTGCCGCTGCTGATGGAAAAGATTCCGCCGGGGAAGAGAAGGTTGCTCCGACCGGGTTTTTTAGCAAGTATCCGGCTCTTGTTACcggttttttcttcttcacttgGTACTTCTTGAATGTGATTTTCAACATTCTCAACAAGAAGATCTATAATTATTTCCCCTATCCTTACTTCGTGTCGGTTATCCATTTATTTGTGGGAGTGGTTTACTGTTTGATAAGCTGGACCGTGGGCCTTCCTAAGCGTGCTCCAATAGACGCCAACCTGCTGAAATTGCTGATTCCAGTAGCTGTGTGTCATGCATTAGGCCATGTGACTAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACACATACTATTAAAGCTCTTGAGCCATTCTTTAATGCTGCTGCTTCACAGTTCATACTTGGACAATCAATTCCTATCACTCTATGGCTTTCACTAGCTCCAGTTGTTCTTGGTGTGTCACTTGCATCTTTGACTGAGCTTTCATTCAACTGGCTGGGATTCATTAGTGCTAtgatttcaaacatttcatttacaTACAGGAGTATCTATTCAAAGAAAGCCATGACTGATATGGATAGTACCAATATCTATGCCTATATTTCAATCATTGCTCTAATTGTCTGCATACCACCGGCCTTAATTCTGGAAGGGCCTACACTGTTGAAGAGTGGCTTCAGTGATGCAATTGCTCAAGTTGGTTTGGTCAAGTTTGTATCAGATCTTTTTTGGGTTGGTATGTTTTACCATCTCTACAACCAGGTGGCCACCAACACACTGGAGAGAGTTGCGCCACTTACTCATGCAGTTGGCAACGTACTCAAACGTGTATTTGTTATTGGATTTTCAATAATTATCTTCGGTAACAAGATTTCCACCCAAACTGGCATAGGAACTGCCATTGCAATTGCTGGAGTAGCACTCTACTCCTTCATCAAAGCGAAGATTGAGGAAGAGAAGCGACAAGCAAAAGCAGCATAA 1212 0.4241 MESRVLSRATTLSSLPRLNKFHREHIATNASLLSVKSIGSVSDGGNLVWGRQLRPELCSPAIKKGSVLLRPCLAAADGKDSAGEEKVAPTGFFSKYPALVTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWTVGLPKRAPIDANLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVLGVSLASLTELSFNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPALILEGPTLLKSGFSDAIAQVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTAIAIAGVALYSFIKAKIEEEKRQAKAA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01980 403 Coils Coil 386 403 - -
Tsu02g01980 403 Pfam Triose-phosphate Transporter family 100 387 IPR004853 -
Tsu02g01980 403 PANTHER SOLUTE CARRIER FAMILY 35 12 395 - -
Tsu02g01980 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 319 388 - -
Tsu02g01980 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 236 - -
Tsu02g01980 403 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 99 397 IPR004696 GO:0016021|GO:0022857|GO:0055085
Tsu02g01980 403 PANTHER BNAC02G47130D PROTEIN 12 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01980 Tsu-Chr2 19111690 19115506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01980 1 401 Antiporters AT5G46110 78.832 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01980 K15283 - gmx:100794336 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01980 02 19111690 19115506 Tsu02g01980 02 19111690 19115506 ECH