Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01979 ATGGCAAGGACATCCCAGGAGTATCAATATCTACCAAACCAGTCTGGCATTAAATCTGATGCTTTTGGACAGTTCGGCCAATCTCATTTACATACTCCGAAGGAGGGTCCTTCGAGAAACTCTCCACTACCTAGAATTCATGCCACCAAGGGTCATTCTTCTCGTGTTTCTCTTTTGTCTCAACAAGACAAGAAAGGGAGTCCCTACCGGTCTCCTCCTGGGGATGATGATGTTGTCCCTACACAGGAATTGTACACAAACATGGCGAATGTTGGAATGAACTCCCACCAAACTGATTCCCAAACTGGTGGGTCAGAAAATCCCTATGCTTCACCCAGTGGACAAATTTTGCAAAACAATGCAACGCATAATGAGAGGAAACGGAAGGGTGATGATGGCAAAATTCCAAGGGATGTTGAAGCCAATGAGATGAGAATCCAGAAAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGaatgaGGAGCGGATAAGGAAAGAAATGGAGAGACAAGATCGTgaaagaaaaaaggaagaagagaGATTGATGCGTGAGAGACAGCGTGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATCTGCTGAGAGAAAATTTAAAAGCTGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCACATGCCCGTAAAATAGCTAAGGAATCCATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGCTTCAAGCAAGGGGCTTTCCTCTATTATCCGTCTTGATTTTGATACTTTGCAAAACATTGAATCATTTAGGGGTTCACTGTGTGTTTTCCCACCCGAGAATGTAAAGCTAAGAAAACCGTTTGCTATCCAACCGTGGTTCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAATTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTACgATTCAAGATTGTTAGGTGAGATACATGTTGCTATCCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTGTTACAGGATTAGGAATGAATCAGAATGGTGCCGCTAATTCTGGAGGTGGCCATCCAGAGATTGTAGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACAAGTTCACGTGCAAATACTAAAGATGAGGGAAGAAGTTGTGAAGATACCATTTCTGCACTTCGTAATGGTTCAGCAGCTGAAAATGCTGTGGCAAAAATGCAGGAGAGAGGTCTATTAGGACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCACGTTCTCTCGCTAGAGAGTGGTGAGGGATTGAATGTAATAGAGCTTGCCGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACAAGCAAGACACCCGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCCGAAGCAAGaaagaaaattcaaatatttgaaaatggGTTTCTAGCTGAGGAAGATGCTGATGATGGTGAAAGAGAAGAGTCAGAAAGTGAAGTCGATGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACATTGTAATGATTTTTCATCAAGTGGAAAAGAAAATCTAGGTCATGATGCAGAACTTAAAGACGAGTTCGATAAGGATCTGCCTTGTTATCCTGACAATGGTTCTAAGAGTGCTGATCGTCCGCGTGCAGTTTCTGGACAACCTGTTGCTTGTGAAAATCTAAATGCCAGAAATCTAGGTGAAGATAACATGGAAATTGATGAAAGTAAGTCTGGAGAGTCTTGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGATTAAATGCTCTTGTTGTATTGGTTGGTGTGGCaaatgaaggaaattcaatACGTGTTGTTCTCGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTTGGCAGAAGGACAGATAGATAAAATTCGCCTGAAAGATGATAATGTCATTAAATCAGATTTTCCTGCTATCAAGGTTGAAACACAGCCTACATGTGCTGCTGTGGAGGGCAACCAAAGCCCATTGCTTGATATTAATAgttgcaataataataataataatgaggaATCTCCCagcaaaacagaaaataaaagacTAGCTCTTGTTGGACAAAACCTGTCTGAAAAGCTCTCATCAAGTCAAGATCTCTGCATAGGTCCTGATAGTTCTCAGACCCTGTTATCTGCTCAATATTCAAAACGGTCACGATCTCAATTGAAGTCTTATATTTCCCACCTAGCAGAGGAGATGTACATCTATAGATCTTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGTTCGGGAAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGACGCCCTTCTGAACTCACTGGATTCACGTGGGATCAGGGAATCTCATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAATGCAAAATGTGCCAAAATCGGGAACACAGATGAAATCCGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGACAACCATACTAGATCTGACAGTCCTAGTAGTACTCTTTGTGGCTTGAGCTCTGATACTTCAGAAGCTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGGGAAGATATCAAGATTTTCAAAAATGGTTGTGGAAAGAATGTTATAATCCATCGATATTATGTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCAGGTTGACATATGTGATACCTGTCTCGACCTTTATTGCTTGGAAGATTCCCATTGCAGTTATTGCCACCGCACTTTTCCACCAAATGATggatttaatttttctaaacaTGCTTTTGAATGTGGAGACAAGTTAcctaaaaatatttgtattttggaTTCTTCTCTTCCTTTGCGGACAAAACTTCTTAAGGCCATACTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAATTTGGACAGAAGATATTAGGAGGCTTTGGGGTGTGAAGTTGAACAGATCTTCTTCTGTTGAGGAACTTCTACAGATATTGACTTTATTTGAGAGAGCACTAAAGCGAGATTTTTTATCATCATCCTTTTCTACAACTGGGGATTTGTTGGGGATGAGCACTATGTCGCAGAGTGCTGCACATACTTCCATGGATCTTGAATCAGTTCCTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGTTTGACACATCCATCGCTTACGTTAAGCCAGAGAAACCTGAGCTGTATGAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCCTCTGTCAAATCTACTAAAGTGGTTGAGCCAGCAGACTTGGATCGTGATGAATTAATGAAAGTGAAATCTGCCCCTATTGTGCGCAGCAGCAAAAAACGGGGACGAGTGAATCATGATAAAGGAAGGGCTAAAAAGCTGTCTAGAAGAACAAATGATTCCAAACGAGATAATGTCCACCACAATTTTATGGTCACTGATAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCACAAGGACAAGCAGGTGGACGTGGCCCTCGGACAGTTAGGAAAAGGAGAGCGGAGAAGAGGGTTGTTGAAGATTTTTTGTTGGATGATAGGGCTGCCAATCATAATATTGGTAGAGAATCATCAAGAATCTTGGATGGGGACTGGAATGATGAGAAGACAGGTCCCATCCATATGGAAGATGCTGACATGAGTAGCAGCAGTGAAGAGGTTGAATATGATGACAACGCCCAGGCAGTAGAATCTGATGACAATGTCGAAGCAGTAGAGTATGGTCAAGGGAACTGGGAGATAGGTTTTAATGGTACCCCCAACAGATGGAATAGGGATTTGGTTGGAATGAGCGATGAAGATGCGGAAGCTTCTGAAGATGACAATAACAATGGCATTGAAGAGAATGAAgtggaagaggaagaggaagaggaggagGGTTCTGAAGCAGATGTTATGAGCGAGGGTTCAGCTGGTATGGCCAATAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGCGACTCCGAAGATTCTTCCGATTAG 4548 0.4039 MARTSQEYQYLPNQSGIKSDAFGQFGQSHLHTPKEGPSRNSPLPRIHATKGHSSRVSLLSQQDKKGSPYRSPPGDDDVVPTQELYTNMANVGMNSHQTDSQTGGSENPYASPSGQILQNNATHNERKRKGDDGKIPRDVEANEMRIQKELEKQDNLRRKNEERIRKEMERQDRERKKEEERLMRERQREEERTKREEKREIERREKYLLRENLKAERMRQKEELRKEKEAERRKAALEKAHARKIAKESMELIEDEQLEMMELAASSKGLSSIIRLDFDTLQNIESFRGSLCVFPPENVKLRKPFAIQPWFNSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPVTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKRSITSSRANTKDEGRSCEDTISALRNGSAAENAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKTSEHCNDFSSSGKENLGHDAELKDEFDKDLPCYPDNGSKSADRPRAVSGQPVACENLNARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEGQIDKIRLKDDNVIKSDFPAIKVETQPTCAAVEGNQSPLLDINSCNNNNNNEESPSKTENKRLALVGQNLSEKLSSSQDLCIGPDSSQTLLSAQYSKRSRSQLKSYISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAKCAKIGNTDEIRVKNEADETDSSPDNHTRSDSPSSTLCGLSSDTSEASSSFRIELGKSESDKKAALGRYQDFQKWLWKECYNPSILCAMKYGKKRCKPQVDICDTCLDLYCLEDSHCSYCHRTFPPNDGFNFSKHAFECGDKLPKNICILDSSLPLRTKLLKAILAFIEVSVPPEAFQSIWTEDIRRLWGVKLNRSSSVEELLQILTLFERALKRDFLSSSFSTTGDLLGMSTMSQSAAHTSMDLESVPVLPWVPRTTSAVSLRLFEFDTSIAYVKPEKPELYEEKEARYIKLPSRYASVKSTKVVEPADLDRDELMKVKSAPIVRSSKKRGRVNHDKGRAKKLSRRTNDSKRDNVHHNFMVTDNLSQRIKQQGQGSQGQAGGRGPRTVRKRRAEKRVVEDFLLDDRAANHNIGRESSRILDGDWNDEKTGPIHMEDADMSSSSEEVEYDDNAQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEDAEASEDDNNNGIEENEVEEEEEEEEGSEADVMSEGSAGMANNRVVNEESSDSSDSEDSSD 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1 200 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1287 1303 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1330 1355 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1380 1515 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 620 639 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 53 67 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 988 1005 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 83 121 - -
Tsu02g01979 1515 ProSiteProfiles HARE-type HTH domain profile. 496 565 IPR007759 GO:0006355
Tsu02g01979 1515 Coils Coil 1458 1485 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 592 676 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 592 617 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 122 200 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1454 1485 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1 35 - -
Tsu02g01979 1515 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 877 949 IPR028941 -
Tsu02g01979 1515 Coils Coil 139 204 - -
Tsu02g01979 1515 Pfam DDT domain 315 370 IPR018501 -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1287 1315 - -
Tsu02g01979 1515 ProSiteProfiles DDT domain profile. 314 373 IPR018501 -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 974 1005 - -
Tsu02g01979 1515 Coils Coil 210 247 - -
Tsu02g01979 1515 Pfam HB1, ASXL, restriction endonuclease HTH domain 496 564 IPR007759 GO:0006355
Tsu02g01979 1515 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 700 743 IPR028942 -
Tsu02g01979 1515 Coils Coil 739 759 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1403 1418 - -
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 640 658 - -
Tsu02g01979 1515 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1515 IPR044977 GO:0006357
Tsu02g01979 1515 MobiDBLite consensus disorder prediction 1380 1402 - -
Tsu02g01979 1515 PANTHER HOMEOBOX DOMAIN PROTEIN 1 1515 - -
Tsu02g01979 1515 SMART testlast3 314 373 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01979 Tsu-Chr2 19093495 19103661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01979 2 1442 Homeobox Transcription Factor Family AT1G28420 48.589 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g01979 WSD 7.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01979 - - gmx:100818817 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01979 02 19093495 19103661 Tsu02g01979 02 19093495 19103661 ECH
Tsu02g01979 02 19093495 19103661 Tsu08g04037 08 58615834 58624555 PCT