Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01965 ATGCAAATATTTGTTACGGCCCTCACTGGCAAGACTGTTACTCTCGAAGTTGAGAGTTCAGATACCGTAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCTATCCGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTTTTCCGTCTCCGTGGTGGGATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCGTCACCCTTGAGGTAGAGAGTTCGGATACCATAGATAATGTCAAGGTCAAGATTCAAGACAAGGAAGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGGTATGCAGATTTTTGTAAAGACATTGACAGGGAAAACCATTACTTTGGAGGTTGAGAGTTCAGACACGATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACATTGGCTGATTACAACATCCAGAAGGAATCTACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAAATCTTTGTGAAGACATTGACAGGTAAAACCATTACTATTGAGGTGGAGAGCTCAGACACAATTGACAATCTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGATGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTTCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAAATCTTTGTGAAGACCTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCAGACACAATTGATAATGTCAAGGCCAAAATACAGGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGTGGtggattttaa 1536 0.4505 MQIFVTALTGKTVTLEVESSDTVDNVKAKIQDKEGILSDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVFRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKVKIQDKEADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITIEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLDDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEFTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01965 511 ProSitePatterns Ubiquitin domain signature. 461 486 IPR019954 -
Tsu02g01965 511 Gene3D - 284 358 - -
Tsu02g01965 511 Gene3D - 1 75 - -
Tsu02g01965 511 Gene3D - 111 130 - -
Tsu02g01965 511 Gene3D - 435 511 - -
Tsu02g01965 511 Gene3D - 359 434 - -
Tsu02g01965 511 Gene3D - 207 283 - -
Tsu02g01965 511 Gene3D - 131 206 - -
Tsu02g01965 511 PRINTS Ubiquitin signature 141 161 IPR019956 -
Tsu02g01965 511 PRINTS Ubiquitin signature 162 182 IPR019956 -
Tsu02g01965 511 PRINTS Ubiquitin signature 183 204 IPR019956 -
Tsu02g01965 511 ProSitePatterns Ubiquitin domain signature. 233 258 IPR019954 -
Tsu02g01965 511 CDD Ubl_ubiquitin 207 282 - -
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 112 206 IPR029071 -
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 434 510 IPR029071 -
Tsu02g01965 511 CDD Ubl_ubiquitin 435 510 - -
Tsu02g01965 511 Gene3D - 76 110 - -
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 435 510 IPR000626 GO:0005515
Tsu02g01965 511 ProSitePatterns Ubiquitin domain signature. 309 334 IPR019954 -
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 76 128 IPR029071 -
Tsu02g01965 511 PANTHER UBIQUITIN 111 283 - -
Tsu02g01965 511 PANTHER UBIQUITIN 273 438 - -
Tsu02g01965 511 PANTHER UBIQUITIN 351 510 - -
Tsu02g01965 511 PANTHER UBIQUITIN 199 362 - -
Tsu02g01965 511 PANTHER UBIQUITIN 1 110 - -
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 77 111 IPR000626 GO:0005515
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 207 282 IPR000626 GO:0005515
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 283 358 IPR029071 -
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 131 206 IPR000626 GO:0005515
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 283 358 IPR000626 GO:0005515
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tsu02g01965 511 PANTHER - 111 283 - -
Tsu02g01965 511 PANTHER - 1 110 - -
Tsu02g01965 511 PANTHER - 351 510 - -
Tsu02g01965 511 PANTHER - 199 362 - -
Tsu02g01965 511 PANTHER - 273 438 - -
Tsu02g01965 511 CDD Ubl_ubiquitin 131 206 - -
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 359 434 IPR000626 GO:0005515
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 207 282 IPR029071 -
Tsu02g01965 511 SUPERFAMILY Ubiquitin-like 358 434 IPR029071 -
Tsu02g01965 511 ProSitePatterns Ubiquitin domain signature. 157 182 IPR019954 -
Tsu02g01965 511 CDD Ubl_ubiquitin 283 358 - -
Tsu02g01965 511 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tsu02g01965 511 CDD Ubl_ubiquitin 359 434 - -
Tsu02g01965 511 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 209 280 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 361 432 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 79 110 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 133 204 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 437 508 IPR000626 GO:0005515
Tsu02g01965 511 Pfam Ubiquitin family 285 356 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 131 202 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 207 278 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 1 72 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 359 430 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 77 126 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 283 354 IPR000626 GO:0005515
Tsu02g01965 511 SMART ubq_7 435 506 IPR000626 GO:0005515
Tsu02g01965 511 ProSitePatterns Ubiquitin domain signature. 385 410 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01965 Tsu-Chr2 18686301 18688235 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01965 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 89.610 1.38e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01965 K08770 - nta:107780076 951.429