Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01961 ATGATCGTTGGGCGACCACCTAAATCTTCAAAGCTTGATTCTTTGTTCACAAGGTGTTTCAGGAGACGAGAAATTCATAGCACACAAAACCGCTACAAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAACATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATAGACAATGTCAAGGCCAAGATTCAAGATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTAATTTTTGCAGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCTACCCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTTATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACCATTACTCTCGAAGTTGAGAGTTCTGATACCATAGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGCGGTGGTATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCAGACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAACATCCAGAAAGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAGAGCTCAGACACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCAGATCAACAAAGGTTGATTTTTGCCGGGAAACAGTTGGAAGATGGCCGGACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGTTCAGACACAATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGACTCATTTTCGCTGGGAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACCTTGGAAGTAGAAAGTTCAGACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCCACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTAA 1713 0.4612 MIVGRPPKSSKLDSLFTRCFRRREIHSTQNRYKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01961 570 PANTHER UBIQUITIN 472 569 - -
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 189 265 IPR029071 -
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 444 469 IPR019954 -
Tsu02g01961 570 PANTHER UBIQUITIN 263 472 - -
Tsu02g01961 570 Gene3D - 189 265 - -
Tsu02g01961 570 Gene3D - 110 188 - -
Tsu02g01961 570 Gene3D - 342 417 - -
Tsu02g01961 570 Gene3D - 494 570 - -
Tsu02g01961 570 Gene3D - 25 109 - -
Tsu02g01961 570 Gene3D - 418 493 - -
Tsu02g01961 570 Gene3D - 266 341 - -
Tsu02g01961 570 SMART ubq_7 342 413 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 418 489 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 494 565 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 34 105 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 190 261 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 110 181 IPR000626 GO:0005515
Tsu02g01961 570 SMART ubq_7 266 337 IPR000626 GO:0005515
Tsu02g01961 570 CDD Ubl_ubiquitin 494 569 - -
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 292 317 IPR019954 -
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 136 161 IPR019954 -
Tsu02g01961 570 CDD Ubl_ubiquitin 266 341 - -
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 417 493 IPR029071 -
Tsu02g01961 570 CDD Ubl_ubiquitin 34 109 - -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 520 545 IPR019954 -
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 265 341 IPR029071 -
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 493 569 IPR029071 -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 110 185 IPR000626 GO:0005515
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 32 109 IPR029071 -
Tsu02g01961 570 PANTHER UBIQUITIN 13 472 569 - -
Tsu02g01961 570 CDD Ubl_ubiquitin 418 493 - -
Tsu02g01961 570 PANTHER UBIQUITIN 13 29 190 - -
Tsu02g01961 570 PANTHER UBIQUITIN 13 190 396 - -
Tsu02g01961 570 PANTHER UBIQUITIN 190 396 - -
Tsu02g01961 570 PANTHER UBIQUITIN 29 190 - -
Tsu02g01961 570 PANTHER UBIQUITIN 342 548 - -
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 368 393 IPR019954 -
Tsu02g01961 570 CDD Ubl_ubiquitin 190 265 - -
Tsu02g01961 570 PANTHER UBIQUITIN 13 342 548 - -
Tsu02g01961 570 CDD Ubl_ubiquitin 342 417 - -
Tsu02g01961 570 PRINTS Ubiquitin signature 44 64 IPR019956 -
Tsu02g01961 570 PRINTS Ubiquitin signature 86 107 IPR019956 -
Tsu02g01961 570 PRINTS Ubiquitin signature 65 85 IPR019956 -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 190 265 IPR000626 GO:0005515
Tsu02g01961 570 PANTHER UBIQUITIN 13 263 472 - -
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 109 185 IPR029071 -
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 216 241 IPR019954 -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 342 417 IPR000626 GO:0005515
Tsu02g01961 570 ProSitePatterns Ubiquitin domain signature. 60 85 IPR019954 -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 266 341 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 420 491 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 268 339 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 496 567 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 344 415 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 36 107 IPR000626 GO:0005515
Tsu02g01961 570 Pfam Ubiquitin family 192 263 IPR000626 GO:0005515
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 494 569 IPR000626 GO:0005515
Tsu02g01961 570 CDD Ubl_ubiquitin 110 185 - -
Tsu02g01961 570 ProSiteProfiles Ubiquitin domain profile. 418 493 IPR000626 GO:0005515
Tsu02g01961 570 SUPERFAMILY Ubiquitin-like 341 417 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01961 Tsu-Chr2 18630505 18666803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01961 494 570 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.64e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01961 K08770 - cit:102627936 1023.85