Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01959 ATGGAGTATGGAATTACCTTAAAGAAAAGTGAATCAAGaaaacagaaatCCCTACCACACACTTTACCGCAAAACAAATCCCTAGCAGTAGCACACACTTTACCGCAAAAGTTAAAGATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACCGTTACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAGCAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAAATCTTTGTGAAGACGTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCAGACACCATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCGCCAGATCAACAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGtggattttaa 720 0.4306 MEYGITLKKSESRKQKSLPHTLPQNKSLAVAHTLPQKLKMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01959 239 ProSitePatterns Ubiquitin domain signature. 113 138 IPR019954 -
Tsu02g01959 239 CDD Ubl_ubiquitin 163 238 - -
Tsu02g01959 239 ProSiteProfiles Ubiquitin domain profile. 163 238 IPR000626 GO:0005515
Tsu02g01959 239 PANTHER - 73 238 - -
Tsu02g01959 239 CDD Ubl_ubiquitin 87 162 - -
Tsu02g01959 239 ProSiteProfiles Ubiquitin domain profile. 87 162 IPR000626 GO:0005515
Tsu02g01959 239 SMART ubq_7 163 234 IPR000626 GO:0005515
Tsu02g01959 239 SMART ubq_7 40 82 IPR000626 GO:0005515
Tsu02g01959 239 SMART ubq_7 87 158 IPR000626 GO:0005515
Tsu02g01959 239 MobiDBLite consensus disorder prediction 1 16 - -
Tsu02g01959 239 PANTHER - 40 73 - -
Tsu02g01959 239 SUPERFAMILY Ubiquitin-like 73 162 IPR029071 -
Tsu02g01959 239 PANTHER UBIQUITIN 40 73 - -
Tsu02g01959 239 ProSitePatterns Ubiquitin domain signature. 189 214 IPR019954 -
Tsu02g01959 239 Pfam Ubiquitin family 89 160 IPR000626 GO:0005515
Tsu02g01959 239 Pfam Ubiquitin family 42 77 IPR000626 GO:0005515
Tsu02g01959 239 Pfam Ubiquitin family 165 236 IPR000626 GO:0005515
Tsu02g01959 239 SUPERFAMILY Ubiquitin-like 162 238 IPR029071 -
Tsu02g01959 239 PRINTS Ubiquitin signature 97 117 IPR019956 -
Tsu02g01959 239 PRINTS Ubiquitin signature 139 160 IPR019956 -
Tsu02g01959 239 PRINTS Ubiquitin signature 118 138 IPR019956 -
Tsu02g01959 239 SUPERFAMILY Ubiquitin-like 14 86 IPR029071 -
Tsu02g01959 239 Gene3D - 39 78 - -
Tsu02g01959 239 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g01959 239 Gene3D - 163 239 - -
Tsu02g01959 239 Gene3D - 85 162 - -
Tsu02g01959 239 ProSiteProfiles Ubiquitin domain profile. 40 73 IPR000626 GO:0005515
Tsu02g01959 239 PANTHER UBIQUITIN 73 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01959 Tsu-Chr2 18609481 18612732 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01959 40 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 59.740 2.03e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01959 - K08770 mtr:MTR_7g116360 377.481