Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01958 atggaTGATAATGCTCTTGATTCTCCTGAAACTGGCGAGGAATTAAATATGGAACCTTGTATTGGGATGGAattcaaatctatggaagtaGTTAGAGAATTTTACAATAAGTTTGCTAAAAAGATGGGTTTTGGAGTGCGTGTTCGCTCAACGAAACCAAAAAGAGCTATCTTAGTATGTTGTAACGAAGGTCACCATATAGTGAAAAGTTCTAGAAACAAAGAAATTCAAGATGACACGACTCAAGCTAAAAGAAAGTGTTCAACATCTCGAAGTGGTTGTCAAGCTTCACTTATTGTTTCAAGAGGTACAATAGAAAGCAATTGGATTATATGTTCCTTTAATAATGATCATAACCATGACATGGTTAGCCCTAAAAGTGTGACTTATATGAGGAGTCATAAAAAGATGAGCGATGCTGCAAGAAGTCTCGTTGAACAATTTAAGGAAGAAGGTGTGCCGACGGGGAAGGCTGCCGCAATTTTCCATAATGGAGACTTAGCTTTCTCTAATAGGGATTGTTGGAATCATGTTAGAAATCTTCGAAGTAAGAATTTAGACGTTGGAGATGCTCAAGCTGTTTTCAATTATTGCAAAAGGAAGCAGGTagaaaattcaaactttttctatTCAATCCAATGCGATGAAGATTCTCGAATGATAAATTTTTCCTGGGTTGATGCTAGATCAAGATTGGCTTACCAGCAATATGGAGATGTCATAACTTTTGACACCACATATAAGACTAATAAGTATAGTATGCCATTTGCCCCATTTGTTGGATTGAATAATCATTATCAATCCATTTTATTTGGTTGTGCTTTATTACAAGATGAGTCAGAAAGCTCTTTTATCTGGTTGTTTGAAACTTTTCTTGAGGCAATGGATGGGAAAAAGCCTATATCTGTCATAACTGACCAAGATTTAGCTATGAAAGCCGCTTTAGCAAAAGTGTTACCAGAAACTAGACATCGCCTCTGTTTATGGcatattagaaaaaaattccCTGAAAAGTTAGCTCATGTATATCACAAAAAATCTAATTTCAAGCGAGACTTGAAGAGATGCATTTATAATTCACCAAGGATACAAAGTTTTGAAGAAGAATGGAGGCATTTAATGAGCGAGTATAACCTGGAAAACAATGAATGGCTTCAAGGGTTATATAGGATTAGAGAATCTTGGATTCCAATTTACAATAGAAGTAATTTTTTTGCTGGAATGAATACAACACAAAGAAGTGAAAgcattaattcattttttgatTCTTTTGTAAATGCCGCAACAACATTGCAAGAATTCGtgtcaaaatttgaaaaagcGGTTGATAGCCGCTTACAAGCAGAGAAAAGAGAGGATTATGAAAGTAGGCATAAATCTCGCATGGTGGCTACGGGGTCACAACTTGAGGAGCATGCTGCATCTATTTATACCAGAAATATTTTTGGTAAGTTTCAAGATGAGCTTGTAAAGATCAGCCAATTTACGAAAAAAAAGATTAGAAGAGATGGATCAACCTATGTCTATGAAGTGTCCAGTTGTAATGATGCTCAAGATATGTTTATTGTTGACATAGATTTAAACACAAAGATTGCAAAATGTGGATGTCAGCTATTTGAATTTTTGGGGATATTGTGTAGACATATACTTGCACTTTTTCAAGCAAAGAGTATTATTCAAATTCCTAGTCATTTCATTTTACAGCGTTGGACTAAGGATGCTAACAAAGGCATTGAGGTTTGTTACACTGAAAGTAATTTTGATGGTCAGACTAGCACGTCTAAGATTTTAAGAAGGATGCATGCTCAACAAGAAACAAGAATATTAGTTGATCTTGCTGAAGAGTCAGATGAGATATATAAGTTCATTATATCTGAATTGAGTCATACTCGTATGTCAGCTATTGCAATGAAGAAATCAAATTTATCTGTTAACGGTGAAATTTCTCCTTTGGAATCTATTCATAATGTCGATCAAAATGACTTGTCTGAGGAAGGAAGTGAACCACCACAAGCGACCATTAGAAACCCCCGCCCATCACATACAAAAGGGAGAAAGAAGGATGGGGAGAGAACCACTCAAAATTGTAGATTTAAGAGTGGACTTGAACAATCCCTTACTAAATCATTAGTCAAAAGAAGATCATGTCATGTGTGTGATGGACATGGTCACAACAGGAGAACTTGcaagaaaagaaatgaaaatccCTTAACAGACCTCCACTCTTGTACCATATGCACAGCTCGCATCGCAATGCTCTTCGCCCGTATCCTTGAGACCATTCCAAATGCGGTGtga 2298 0.3477 MDDNALDSPETGEELNMEPCIGMEFKSMEVVREFYNKFAKKMGFGVRVRSTKPKRAILVCCNEGHHIVKSSRNKEIQDDTTQAKRKCSTSRSGCQASLIVSRGTIESNWIICSFNNDHNHDMVSPKSVTYMRSHKKMSDAARSLVEQFKEEGVPTGKAAAIFHNGDLAFSNRDCWNHVRNLRSKNLDVGDAQAVFNYCKRKQVENSNFFYSIQCDEDSRMINFSWVDARSRLAYQQYGDVITFDTTYKTNKYSMPFAPFVGLNNHYQSILFGCALLQDESESSFIWLFETFLEAMDGKKPISVITDQDLAMKAALAKVLPETRHRLCLWHIRKKFPEKLAHVYHKKSNFKRDLKRCIYNSPRIQSFEEEWRHLMSEYNLENNEWLQGLYRIRESWIPIYNRSNFFAGMNTTQRSESINSFFDSFVNAATTLQEFVSKFEKAVDSRLQAEKREDYESRHKSRMVATGSQLEEHAASIYTRNIFGKFQDELVKISQFTKKKIRRDGSTYVYEVSSCNDAQDMFIVDIDLNTKIAKCGCQLFEFLGILCRHILALFQAKSIIQIPSHFILQRWTKDANKGIEVCYTESNFDGQTSTSKILRRMHAQQETRILVDLAEESDEIYKFIISELSHTRMSAIAMKKSNLSVNGEISPLESIHNVDQNDLSEEGSEPPQATIRNPRPSHTKGRKKDGERTTQNCRFKSGLEQSLTKSLVKRRSCHVCDGHGHNRRTCKKRNENPLTDLHSCTICTARIAMLFARILETIPNAV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01958 765 Pfam FAR1 DNA-binding domain 33 123 IPR004330 -
Tsu02g01958 765 Pfam SWIM zinc finger 523 556 IPR007527 GO:0008270
Tsu02g01958 765 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 665 IPR031052 GO:0006355
Tsu02g01958 765 Pfam MULE transposase domain 240 334 IPR018289 -
Tsu02g01958 765 MobiDBLite consensus disorder prediction 663 678 - -
Tsu02g01958 765 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 12 665 - -
Tsu02g01958 765 ProSiteProfiles Zinc finger SWIM-type profile. 521 557 IPR007527 GO:0008270
Tsu02g01958 765 MobiDBLite consensus disorder prediction 659 693 - -
Tsu02g01958 765 SMART 26again6 532 559 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01958 Tsu-Chr2 18606063 18609222 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g01958 MULE 9.6e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01958 - - qlo:115970754 834.713