Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01950 ATGCCGGCACAGAAGCGTTCTTTCGATGAGACTCtcgaagaaaatgaagaagagtCTGATAGTGAAATGAATAGCCAGGACCAACCTAACGATGAAGACGaaTCAGATCAGAGTCATTCATCTGATAgcgacgaagaagaagaaaaaatagaagatgACGACGAAGAATATGTGGCTGTAAAATTGTCAGAGGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACCGTAATGGAATGCTTACATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGTCTTGGTAACAATGAATGTCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCGCTGAGAGATGACCCCAACTTTGATGCTATCATTGCTGCTATCTATCCAGATATTGATAAGTATGAGGAAGAGGAATTGGCTTTGCACGAGGATGAGCTGGCTCGCCAGAAGCAGTTCCAAGCATCCATTGCCCAAACGCTACAACGTCAATCTGAAGCATTGAGTAAGAAACGAAATGCCAAAGCTACAGCAGTGGCTTTTGTGAGGAGATCACAAGGCAATTATCGAACTTCACATCTGAGACGCCGAAGAAACTTTAGAAATTCCGGTGACTTTCAGATATCCAATGACAACAAGGGTACGGATGATAATGATGGGGGAAAGGACTCATCTTCTGATGATGGGCAGACAGAAACCCAGCCAAGAAGATGCAAAAGAGGTGGAGAACAAGAAGCACAAGCTCCTCAGCAGTCTGCCTCTACTGATCCAGATGGAGTTGGTGAAGAAAATACTCCAGAAGTAAATAGAGACATCATAAGTGCATCTGGTACACTTTCCTGGGGAAAAAATGGTCACCGGAGTCACAACCGAGTCAATGGAAAGAATGCCAAAAGCAATCGCCTCTCCAAATTGGTTGAACATCTTCGCAGCACGGCAGCAAATGATTATGAGCTGCCTGCCTTTCTCATGCTTGTCTCGTTTGATGAGAAAAGAATGCCAAGTTTAAAAGACCCATGCCTTAATTGCAAGCCTACTATGTCAGTTAAGAAACTGTGCAAGCATGTTGCAAATGAAACTGCGCTGCCAGTGGATGAAGTTGAATTGTGGTTGGTACTAAAGCCACAAACTAGCATTGTACATGGTGAAAGAACCATTGATCCAGACAGAGATAATTTACGCGTTCTAGGAGACCAAGAAACATTAGCTGAATTGATGGGAGATTATGAAAATGCCAACTATGGTTATGTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACACAACTGGGTTAAGCTGA 1320 0.4235 MPAQKRSFDETLEENEEESDSEMNSQDQPNDEDESDQSHSSDSDEEEEKIEDDDEEYVAVKLSEVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDAIIAAIYPDIDKYEEEELALHEDELARQKQFQASIAQTLQRQSEALSKKRNAKATAVAFVRRSQGNYRTSHLRRRRNFRNSGDFQISNDNKGTDDNDGGKDSSSDDGQTETQPRRCKRGGEQEAQAPQQSASTDPDGVGEENTPEVNRDIISASGTLSWGKNGHRSHNRVNGKNAKSNRLSKLVEHLRSTAANDYELPAFLMLVSFDEKRMPSLKDPCLNCKPTMSVKKLCKHVANETALPVDEVELWLVLKPQTSIVHGERTIDPDRDNLRVLGDQETLAELMGDYENANYGYVVMAYKRKLQNSDTTGLS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01950 439 ProSiteProfiles Zinc finger RING-type profile. 71 111 IPR001841 -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 194 304 - -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 13 54 - -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 250 264 - -
Tsu02g01950 439 PANTHER OS11G0578200 PROTEIN 1 431 IPR044592 -
Tsu02g01950 439 CDD RING-HC_RING1_like 71 111 - -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 274 292 - -
Tsu02g01950 439 SUPERFAMILY RING/U-box 54 142 - -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 1 54 - -
Tsu02g01950 439 Pfam Zinc finger, C3HC4 type (RING finger) 70 110 - -
Tsu02g01950 439 PANTHER OS11G0578200 PROTEIN 1 431 - -
Tsu02g01950 439 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Tsu02g01950 439 SMART ring_2 71 110 IPR001841 -
Tsu02g01950 439 MobiDBLite consensus disorder prediction 220 248 - -
Tsu02g01950 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01950 Tsu-Chr2 18514958 18521277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01950 64 134 C3H Transcription Factor Family AT3G23060 35.135 8.12e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01950 K10695 - jre:109020785 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01950 02 18514958 18521277 Tsu02g01950 02 18514958 18521277 ECH