Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01949 ATGTCAGAAAATAAGAGTTCTCAAGAGAAGACTCTCAAACAAAATGAGAAGATTGAGAATCATATCAACAACCATGAGATACCTAAAAATGAAATTGATTCTGAAGATTATGAtgctcaagaagaagaagaagaATATGTAGAGGTAGATTTAGATAAATTAAAGGATCTTAATTGTCCTATCTGCAATGGCATTATTAGAAAAACCAAAACTATAAAGGAATGTATTCACCGTTTTTGCAGAGAGTGCATAGATATCTATGTCAACAATGGaAACAAACAATGTCCTGTTTGTTTTACACATTTTCTTCACCAAAACTCCGTGTTAGATGATAAACATTATGATGCCATAATTGTGGCATTCTACCCGGATATCGAAAAGGTTAAGAAAGAGACACATGTGGTGGAAGAATCTGAGAAAGGACCAAGAGTAGTTGCTGATGAAACTGGTGCGGGTGAAGAAGCCACATGTTGCTAA 477 0.3312 MSENKSSQEKTLKQNEKIENHINNHEIPKNEIDSEDYDAQEEEEEYVEVDLDKLKDLNCPICNGIIRKTKTIKECIHRFCRECIDIYVNNGNKQCPVCFTHFLHQNSVLDDKHYDAIIVAFYPDIEKVKKETHVVEESEKGPRVVADETGAGEEATCC 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01949 158 Pfam Zinc finger, C3HC4 type (RING finger) 58 98 - -
Tsu02g01949 158 PANTHER OS11G0578200 PROTEIN 6 140 IPR044592 -
Tsu02g01949 158 MobiDBLite consensus disorder prediction 1 41 - -
Tsu02g01949 158 SUPERFAMILY RING/U-box 45 110 - -
Tsu02g01949 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 148 IPR013083 -
Tsu02g01949 158 SMART ring_2 59 98 IPR001841 -
Tsu02g01949 158 ProSiteProfiles Zinc finger RING-type profile. 59 98 IPR001841 -
Tsu02g01949 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 6 140 - -
Tsu02g01949 158 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Tsu02g01949 158 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01949 Tsu-Chr2 18508343 18513295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01949 57 98 C3H Transcription Factor Family AT3G23060 46.512 1.94e-07 47.8