Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01948 ATGGCCGAAATTTCACATTCAGGGTATAAGGATTATGTCGCTGGTTTACTCGCTGGAGTTTCCGCTGTAGTCACTGGTCACCCTTTTGACACCGTTAAGGTGAAGCTGCAGACGCACAACACAAAAGCACATCTAGTTCAATACAGAAATGGATTGCATTGTACTGCTAGGATATTACAGACTGAAGGAATCAAAGGATTTTATAGAGGAGCAACATCATCTTTTGCTGGGATGGCTTTGGAAGGATCTCTCTTTTTCGGCATTTATTCCCAGACAAAACAGTACCTTCAGGGTGGCGTGCAAAGCGGTGCGCCGCGACCTCAGGTTGTAATACCGTCTGCAGCTTTTAGTGGTGCCATCAATAGTTTTGTGTTAGGTCCAACAGAACTGATAAAGTGTAGGATGCAGATCCAAGGCACTGACTCTTTAGTTCCCGTGTCAAGTAGATACAGTAGTCCCCTTGATTGTGCCCTGAAAACTTTAAAAACTGAAGGGGTGAAAGGAGTATTTCGCGGAAGTGGTACAACATTGCTTAGAGAATCTATAGGGAATGCTACATTTTTCAGTGTATATGAATATATGCGCTATCGAATGCATTCATATATCAAACCCGCTTCATCCGATTACAGCCACCTGATTGAAATTGGAATTGGAGTTGTTACCGGTGGAGTTAGTGGTGTGGCCTTTTGGTTGGTAGTTATGCCCCTTGACGTGGCAAAGACACTAATTCAGACAAACCCGGATAAAAACTGTCCCAGAAATCCTTTTACGATCTTGAGTTCAATTTACAAGAGGACTGGTTTGAAGGGGTGCTATACAGGTCTCGGCCCCACGGTAAGTCGAGCATTTCCAGCTAATGCGGCAACAATTGTCACCTGGGAGCTAGCAATGAAAATGCTAGGCATTAGGCACGACTAA 918 0.4423 MAEISHSGYKDYVAGLLAGVSAVVTGHPFDTVKVKLQTHNTKAHLVQYRNGLHCTARILQTEGIKGFYRGATSSFAGMALEGSLFFGIYSQTKQYLQGGVQSGAPRPQVVIPSAAFSGAINSFVLGPTELIKCRMQIQGTDSLVPVSSRYSSPLDCALKTLKTEGVKGVFRGSGTTLLRESIGNATFFSVYEYMRYRMHSYIKPASSDYSHLIEIGIGVVTGGVSGVAFWLVVMPLDVAKTLIQTNPDKNCPRNPFTILSSIYKRTGLKGCYTGLGPTVSRAFPANAATIVTWELAMKMLGIRHD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01948 305 Gene3D Mitochondrial carrier domain 3 110 IPR023395 -
Tsu02g01948 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 197 IPR018108 -
Tsu02g01948 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Tsu02g01948 305 Gene3D Mitochondrial carrier domain 111 305 IPR023395 -
Tsu02g01948 305 SUPERFAMILY Mitochondrial carrier 7 294 IPR023395 -
Tsu02g01948 305 Pfam Mitochondrial carrier protein 219 300 IPR018108 -
Tsu02g01948 305 Pfam Mitochondrial carrier protein 9 97 IPR018108 -
Tsu02g01948 305 Pfam Mitochondrial carrier protein 113 196 IPR018108 -
Tsu02g01948 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 95 IPR018108 -
Tsu02g01948 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 132 - -
Tsu02g01948 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 132 304 - -
Tsu02g01948 305 PANTHER - 6 132 - -
Tsu02g01948 305 PANTHER - 132 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01948 Tsu-Chr2 18458485 18462342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01948 25 300 Antiporters AT1G79900 28.472 1.82e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01948 K15109 - gmx:100815087 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01948 02 18458485 18462342 Tsu02g01948 02 18458485 18462342 ECH