Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01947 ATGGAGACAAGAAGGTCAGAGGGCAAGAGGAGTTTAAGATACAAAGAGgaagacgaagaagaagaagaagacgaagacgaCATGGAttttgaagaggaagaagatggtAGAAGGAAGAGGGTAGTGACAGATCTCTATAGCAACAAGAAAAGTTCTAACAAAGCTGGTGGCTCAAATATTACACCTTGTTGTCAAGTTGAGAATTGTGATGCTGATCTGAGTGAAGCTAAACAGTATCACCGGAGACATAAGGTTTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGGGATGCCTCAAAGGTTTTGTCAGCAATGTAGCAGATTCCACGAGCTATCCGAATTTGATGACTCAAAAAGAAGTTGTAGAAGGCGTTTAGCCGGGCATAATGAGAGGCGTCGCAAAAATACAAGTGATTATCAAGGAGAATAA 438 0.3721 METRRSEGKRSLRYKEEDEEEEEDEDDMDFEEEEDGRRKRVVTDLYSNKKSSNKAGGSNITPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGMPQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNTSDYQGE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01947 145 Gene3D - 54 125 IPR036893 GO:0003677|GO:0005634
Tsu02g01947 145 MobiDBLite consensus disorder prediction 1 41 - -
Tsu02g01947 145 Pfam SBP domain 64 137 IPR004333 GO:0003677
Tsu02g01947 145 MobiDBLite consensus disorder prediction 1 16 - -
Tsu02g01947 145 MobiDBLite consensus disorder prediction 17 32 - -
Tsu02g01947 145 PIRSF SBP 1 145 IPR017238 GO:0003677|GO:0003700|GO:0009908
Tsu02g01947 145 Coils Coil 14 34 - -
Tsu02g01947 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 139 - -
Tsu02g01947 145 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
Tsu02g01947 145 SUPERFAMILY SBT domain 62 142 IPR036893 GO:0003677|GO:0005634
Tsu02g01947 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 139 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01947 Tsu-Chr2 18449574 18453344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01947 49 141 SBP-box Gene Family AT2G33810 70.968 1.98e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu02g01947 SBP 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01947 - - gmx:100527199 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01947 02 18449574 18453344 Tsu02g01947 02 18449574 18453344 ECH
Tsu08g04058 08 58816353 58819111 Tsu02g01947 02 18449574 18453344 ECH
Tsu02g01947 02 18449574 18453344 Tsu08g04058 08 58816353 58819111 PCT