Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01942 ATGGCTGCTTCACCTTCTTCAGCTCTCAATTccctttcttctctctctttccgttcttcttcttcctcttcttgttTCTCTCTCCTCCCTACTACCAACAAACTCACATTCCCCCTCCTCACAAAAACCCCACTCTCCCTCTCCTTCACCGTCAAATCCACCACCTCCGAACAACAACAAGAAGACGACCTTCCATTCAACCCACCCGAAATCCCCGAAGATTTCATCAACCCACCATCAATCTTCGACGAACaagaagaagacgaagacgaAATCGCCGCAGCATTTGAAAAGCTTTACGGTCCATCCTACAGTGGAGTTAGTGTATTAGGAAATGACATAAACGAGATGGATTCTAAGTTGAAAAAGGAAACGGGAATTGGAGGTGGTAGGAAGAAACAAAGGGGTAAGATAAGAGATGGGTTTGAAGAAAGAGTTGTTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTGTTGTTATTGTTGGTAATAAGAAGGGTCAAgttggtgttggtgttggtaAGGCTAAAGAAGTTATTTCTGCTGTTCAGAAATCTGCTATTGATGCTAGAAGGAATATTGTTACTGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGAGCTGACGGAGATTTTGGAGCAGCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGGTCTGTGAGAATCGTTCTTGAATTGGCAGGTGTTGAAAATGCTTTGGGGAAACAAATAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTTACTGCAGTGCTGAAAATGAAGCAGTACAGTGAGGTCGCCGAAGAGCGTGGATTGCCTATGGAAGAGTTATGGAAGTAA 897 0.398 MAASPSSALNSLSSLSFRSSSSSSCFSLLPTTNKLTFPLLTKTPLSLSFTVKSTTSEQQQEDDLPFNPPEIPEDFINPPSIFDEQEEDEDEIAAAFEKLYGPSYSGVSVLGNDINEMDSKLKKETGIGGGRKKQRGKIRDGFEERVVQVRRVTKVVKGGKQMRFRAVVIVGNKKGQVGVGVGKAKEVISAVQKSAIDARRNIVTVPMTKYLTFPHRADGDFGAAKVMLRPASPGTGVIAGGSVRIVLELAGVENALGKQIGSDNALNNARATVTAVLKMKQYSEVAEERGLPMEELWK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01942 298 Pfam Ribosomal protein S5, C-terminal domain 219 289 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tsu02g01942 298 PANTHER RIBOSOMAL S SUBUNIT 44 298 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g01942 298 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g01942 298 Pfam Ribosomal protein S5, N-terminal domain 142 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g01942 298 Hamap 30S ribosomal protein S5 [rpsE]. 117 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
Tsu02g01942 298 Gene3D - 209 297 IPR014721 -
Tsu02g01942 298 ProSitePatterns Ribosomal protein S5 signature. 159 191 IPR018192 -
Tsu02g01942 298 SUPERFAMILY dsRNA-binding domain-like 139 207 - -
Tsu02g01942 298 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 44 298 - -
Tsu02g01942 298 Gene3D - 139 203 - -
Tsu02g01942 298 ProSiteProfiles S5 double stranded RNA-binding domain profile. 142 205 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g01942 298 SUPERFAMILY Ribosomal protein S5 domain 2-like 212 290 IPR020568 -
Tsu02g01942 298 TIGRFAM rpsE_bact: ribosomal protein uS5 141 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01942 142 298 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 29.091 6.25e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01942 K02988 - gmx:100787105 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01942 02 18346108 18349010 Tsu02g01942 02 18346108 18349010 ECH