Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01919 ATGATGCAAAGCCAACAAGTTATCAAAGAAGACGACGACGGCCCACCACCCGGTTGGCAACCTATCCCCACTCCGCTTCCCCCACCGCCACATCCACTTCCATCCGGTTTTGCTCAAATGGTCTGTGGTTCTTGTCGCCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGGAGTTGTGCGGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCATCATGCCAGTTTGTGACAGAAATTGGGGCAAACAACAAGCGGCCTCCATGGTCTGaacaacaaaacaaaccaaCTCCTCCCAAAACTGGTTGTTAG 393 0.4707 MMQSQQVIKEDDDGPPPGWQPIPTPLPPPPHPLPSGFAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGANNKRPPWSEQQNKPTPPKTGC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01919 130 PANTHER PROTEIN LOL2 25 126 - -
Tsu02g01919 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 39 69 IPR005735 -
Tsu02g01919 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 77 105 IPR005735 -
Tsu02g01919 130 MobiDBLite consensus disorder prediction 16 33 - -
Tsu02g01919 130 Pfam LSD1 zinc finger 80 104 IPR005735 -
Tsu02g01919 130 Pfam LSD1 zinc finger 42 66 IPR005735 -
Tsu02g01919 130 MobiDBLite consensus disorder prediction 110 130 - -
Tsu02g01919 130 MobiDBLite consensus disorder prediction 1 33 - -
Tsu02g01919 130 PANTHER PROTEIN LSD1 25 126 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tsu02g01919 zf-LSD1 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01919 - - gmx:100780865 218.009