Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01917 ATGGCCTTTGAGCATGAAGACTTCATTTCACAAGATTGGAAAGCCACTAGAAATTCTGTCACAGAAACAGAAAAGAATTGTGACAGTTGTTTTGATTGCAACATCTGTTTAGATTTCGCACATGAACCAGTTGTAACACTCTGTGGTCACCTTTACTGCTGGTCCTGTATCTACAAATGGCTCTTTGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCTCCGCAATGTCCAGTTTGCAAGGATGGTATATCTCACACCAAAATGGTCCCTCTTTATGGCAGGGGCCAGAGTACCCTATCTGTCCGCGACCGCGACAGTAAAACAACTGTTCAAGATATTTCTACGCCACCGAGACCATCTGCATCGGGGATTCAGTCTCTATTCGCAATGGCAACATTGCCTCAAAATCAAAATGGTCAACAACTTCCATATCGTAATCCTTATCAGAATCCGCATATTAACTCTCCTCCGTACCAAGAGAGTGATGATGaaacttcacaaatgctcaatcTTGGTAGCTTTATGTTGTCACCAGTATTCCCTCACTATGTCTTTGGTAACTCGGAAAATTCAGATAGCCCTAGGTGGAGAAGGCAAGAGATGTTGGCAAATAAATCATTGAACAGAATAtcattttttctgtttttatgcTTTGTCCTTTGTTTAATCCTCTTCTGA 678 0.3997 MAFEHEDFISQDWKATRNSVTETEKNCDSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQSTLSVRDRDSKTTVQDISTPPRPSASGIQSLFAMATLPQNQNGQQLPYRNPYQNPHINSPPYQESDDETSQMLNLGSFMLSPVFPHYVFGNSENSDSPRWRRQEMLANKSLNRISFFLFLCFVLCLILF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01917 225 Pfam Zinc finger, C3HC4 type (RING finger) 33 79 IPR018957 GO:0046872
Tsu02g01917 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 115 IPR013083 -
Tsu02g01917 225 SUPERFAMILY RING/U-box 27 92 - -
Tsu02g01917 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 225 - -
Tsu02g01917 225 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Tsu02g01917 225 MobiDBLite consensus disorder prediction 100 120 - -
Tsu02g01917 225 CDD RING-HC_AtRMA_like 31 80 - -
Tsu02g01917 225 SMART ring_2 33 79 IPR001841 -
Tsu02g01917 225 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Tsu02g01917 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01917 Tsu-Chr2 18034421 18036256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01917 8 211 C3H Transcription Factor Family AT4G27470 36.916 5.30e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01917 K10666 - gmx:100779793 257.299