Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01911 ATGGCGGGACGATTCTTTGGATCTTCATCTGCTTCGATCTCCATGACCGTAACAAACACGCCTTCTCAGGAACTCGCCCTAACCAACCTCGCCTTCATCTCCGCCTCCGATCTCCCCAAATTCGCCGTCCCTAATCACGAAAACCTATTCCTAGCTTCAATCGGCGATTCCTACGTTTTCTCTTTCTCAGCTCATGAAAGCATACGTGGTGGACATATTGCATTGAATTCAATTCAACGTCGATGTGCAAAAGTTTCTGCTGGTGAATCCGTAGATGTGACTAGATTCGTGCCGCCTGAAAACTTCAACCTGGCAGTGTTAACCCTTGAATTGGACTTCATTAAAAGGGCTGGAAGCAGAAGTGAACAGATTGATGCTATTGTACTTGCCAAGCAACTTCGGAAGAGGTTTTCAAAGCAGGTAATGACAGCAGGGCAGAAAGTTTTATTCGAGCATCAAGGAATTAATTATAGCTTTACAGTCAGTCATGTTACTGTTGAGGGCCAAGAAAGGTCTACTGATAGAGGGATGATTTCGGATGACACATTCATTGCTTTTGAAGCATCACGTGATAGTGGAATTAAGATTATCAACCAGCGCGATGGTACTACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTGAGTCTCTGGGTATTGGTGGCCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCTCATGTGACATCTAAATTAGGGATCAAGCATGTCAAGGGCATGCTGCTTTATGGTCCTCCTGGAACTGGAAAGACTCTTATGgcacgtcaaattggaaaaaTTTTGAATGGCAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTGGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGAATCTAGGGGATGAAAGTGATTTGCATGTTATCATATTTGATGAAATTGATGCTATTTGTAAGTCCAGAGGCTCAACTCGAGATGGTACAGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAATCACTAAACAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAGGCACTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTACCTGATGAAAATGGTCGAATGCAAATTCTTCAAATTCACACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCATGATGTGAACCTTCAAGAGCTTGCTGCTCGAACTAAAAATTACAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGCCTAGATGATCTCACTAAGCCAGTGGAGGAGGAAAATATTAAGGTTACGATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTAATTGCTGAGCAAGTTAAAGTGAGTAAAGGAAGCCCCCTTGTTACTTGTCTTCTGGAAGGTTCTCGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTAGGTATTGATAGTGACTTCGCATATGTCAAGATAATTTCAGCGGAAACAATGATCGGTCTACATGAGAGCACTAAATGTGCCCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCTTTGAGTGTCATTGTTCTTGATGACCTTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGTTTTTCAAACTTGATCTCTCAGACACTACTGGTCCTGCTCAAAAAGCTTCCCCCGAAGGGGAAAAAACTCATGGTAATTGGTACAACAAGTGAGGTCGACTTTTTGGATTCGATTGGTTTTTGTGATACATTCTCCATAACTTACCATTTGCCCACTTTAAACAGAAACGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATTGATTCTGCCGCAGAGGCATTGGATAATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGTTCGCAAGGTGGATCTGCCGAAGCTGTCTATTCTGGCAAAGAGAAGATTAATATATCCCATTTCTTCGATTGCCTTGGGGATGTTACCAGATTAGTATAA 2235 0.4183 MAGRFFGSSSASISMTVTNTPSQELALTNLAFISASDLPKFAVPNHENLFLASIGDSYVFSFSAHESIRGGHIALNSIQRRCAKVSAGESVDVTRFVPPENFNLAVLTLELDFIKRAGSRSEQIDAIVLAKQLRKRFSKQVMTAGQKVLFEHQGINYSFTVSHVTVEGQERSTDRGMISDDTFIAFEASRDSGIKIINQRDGTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRNLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRMQILQIHTNKMKENSFLAHDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLIAEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFAYVKIISAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDLERLLEYVPIGPRFSNLISQTLLVLLKKLPPKGKKLMVIGTTSEVDFLDSIGFCDTFSITYHLPTLNRNDAKKVLEQLNVFADEDIDSAAEALDNMPIKKLYMLIEMAAQGSQGGSAEAVYSGKEKINISHFFDCLGDVTRLV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01911 744 Gene3D - 207 397 IPR027417 -
Tsu02g01911 744 PANTHER BNAA03G50350D PROTEIN 61 742 - -
Tsu02g01911 744 PANTHER BNAA03G50350D PROTEIN 1 39 - -
Tsu02g01911 744 SUPERFAMILY ADC-like 12 96 IPR009010 -
Tsu02g01911 744 CDD AAA 254 397 - -
Tsu02g01911 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 495 IPR027417 -
Tsu02g01911 744 Pfam Cell division protein 48 (CDC48), domain 2 123 180 IPR004201 -
Tsu02g01911 744 Gene3D - 99 196 - -
Tsu02g01911 744 SMART AAA_5 252 399 IPR003593 -
Tsu02g01911 744 SMART AAA_5 532 670 IPR003593 -
Tsu02g01911 744 CDD AAA 517 605 - -
Tsu02g01911 744 SUPERFAMILY Cdc48 domain 2-like 99 200 IPR029067 -
Tsu02g01911 744 Gene3D - 494 665 IPR027417 -
Tsu02g01911 744 Gene3D - 9 96 - -
Tsu02g01911 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 707 IPR027417 -
Tsu02g01911 744 Gene3D - 398 485 - -
Tsu02g01911 744 Pfam AAA+ lid domain 423 478 IPR041569 -
Tsu02g01911 744 Pfam ATPase family associated with various cellular activities (AAA) 537 651 IPR003959 GO:0005524|GO:0016887
Tsu02g01911 744 Pfam ATPase family associated with various cellular activities (AAA) 256 396 IPR003959 GO:0005524|GO:0016887
Tsu02g01911 744 PANTHER VESICULAR-FUSION PROTEIN NSF 61 742 IPR039812 GO:0016887|GO:0035494
Tsu02g01911 744 PANTHER VESICULAR-FUSION PROTEIN NSF 1 39 IPR039812 GO:0016887|GO:0035494
Tsu02g01911 744 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Tsu02g01911 744 SMART CDC48_N_2 14 99 IPR003338 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01911 Tsu-Chr2 17897931 17909619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01911 220 471 Calmodulin-binding Proteins AT3G56690 32.677 1.47e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01911 K06027 - gmx:100779259 1257.28