Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01910 ATGGAGCTAAACTTTGGTAATTCTTTAGACACATTTTCTTGTGATCAAGATGGTTTGTCCCTTAAGCCATTAAGGTGCCCTGCACCTTTTCTTTTGAAGACCTATGATTTGTTGGAAGAAGGTAGTGAAGAAAAAGATGGCATTAAAATAGTGTCATggaatgaagaaggaaatggTTTTGTTGTGTGGTCTCCAGCTGAATTTTCAGAGCTTATCTTGCCTAGATATTTCAAGCACAATAACTTCTCTAGCTTTATTCGACAATTGAATACATATGGATTTAAGAAAACATCATCTAAAATATGGGAATTCAAGCATGAGAAATTTCAAAAGGGTTGCAGGAAAATGCTTGTTGAAATCAATAGGAAAAAGTGTGAGCCAAGTGTGTTTCCTCAATATCTCAAATCTTGTTCAGAGGAAAATGCAATGACTAGTTCATCAGTGGAAGAAAGCATTAACAATCATGAAATACTCATTGAAGAGAACAAGAACCTAAAAAAGGAGAGATTAGAGTTGCAAATGCAAATAGCTGAATGCAAGAAACTTGAAATGAAGTTGTTGGATTGTCTCTCTCAATATATGGATACCCGCCAAAATAAAGTTAGGAGACTATAA 615 0.335 MELNFGNSLDTFSCDQDGLSLKPLRCPAPFLLKTYDLLEEGSEEKDGIKIVSWNEEGNGFVVWSPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKTSSKIWEFKHEKFQKGCRKMLVEINRKKCEPSVFPQYLKSCSEENAMTSSSVEESINNHEILIEENKNLKKERLELQMQIAECKKLEMKLLDCLSQYMDTRQNKVRRL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01910 204 Gene3D - 24 125 IPR036388 -
Tsu02g01910 204 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01910 204 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01910 204 SMART hsfneu3 26 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01910 204 Pfam HSF-type DNA-binding 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01910 204 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 203 IPR027725 -
Tsu02g01910 204 Coils Coil 148 185 - -
Tsu02g01910 204 SUPERFAMILY "Winged helix" DNA-binding domain 27 123 IPR036390 -
Tsu02g01910 204 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 23 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01910 Tsu-Chr2 17891490 17893638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01910 26 204 HSF AT4G36990 38.614 1.08e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu02g01910 HSF_DNA-bind 1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01910 K09419 - gmx:100783723 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01910 02 17891490 17893638 Tsu02g01910 02 17891490 17893638 ECH