Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01905 ATGTACGTGGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTCCTTCAAGCTGATATCCAACACGCCAATACTCTGGCGTCGGATTTTCCTAGGGAGTATGACGGTGCATCCGTTCAGATGAGAATGTCATACAGTCCAGCAGCAcacttgtttctgttttttgttcAATGGACAGATTGTCATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACTACCACCATGTCTACCCATGAAAGAAAAGCAAGTATAAGGGAATTCTATGCTGTCATTTATCCCTCTTTATTGCAACTTGAGAAAGGTGTCACTGATTCTGAGGATAAAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGAGGACTATAGACAATCTTCTGATATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCCAACTGTAATCATGCTATGTGCCTCAAATGCTACCGAGAATGGCGAACAAGATCACAGTCGTGCCCATTTTGCCGTGACAGTCTGAAGAGAGTTAACTCAGGGGATCTCTGGGTATTTACTGATAGAAGGGATGTGGTTGATATGGCAACAGTGACAAGGGAGAATCTCAGAAGACTTTTTATGTACATAGATAAGTTGCCTGTGATTGTTCCAGACTCTCTCTTTGACACTTATGACTCTCACATAAGCACAAACACCCTACTCGCCGCAGTTATCAAGTTTCCGGCAACAATCCCTCTGACTCACCATCTCAGAAGTATTATTAGGGTTTCATTGTTCATTACAAAGATCATTGCTAAGAATTTCATGGACATGGTTGCTTCAATGCCTGCAATGAAGCTTGATAAACTCTATGAGAATGCATTCATATGTGAAGCTATTCTCAGGTCTCTTCCACCTCTTGCAAAGAAATATGTGTTACAGCTCCTGCATATTGATGGACCAGTATCGGCTAAATTATTGGCAGAGTGGGTGCTTCCAGATGGACTTTCAAAGCACAAAGTTGCCGTTGATAGATTGGTTCAATTGAGAGTTTTTGTTGAAGCTCTTGACAGGAAGAACGAAAAAACTTACAAAGTCAATTCAACATATCAGAAAAGTCTCCAAAATCTTTTAGTACATGGTGGAACTTTACCGAGGGAATCAATGCCTTCTAATATTACTGTGAGACTCCCAACCTTAGAGGATCTTGAGACTTATGCTCTGGCACAATGGGAGTGTTTCTTGTTGCACCTTATAAGCCCAAGTCATGTTGACAAGACCTTAAATATAAGCTCTTCTCTGATGAAAGTTTTCCAGCGGCGTCTCCTGAGTCAAAGAGACAGAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGAGAATATATCTCTAATTCTGAGGAGAGAGGTGTCGATGCAGGTGACTTGATCTCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGCATATAATATAAACACATTGACCGATTTCCAGAGAAACATTATTAAGGATCTAGCAGACCTTGGACTGGTCAAACTTCAACAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTGGCAACAAATCTTTCAGTGAGCATGACCGAATCATCATCAAGAAAGGaggttttttctttgtttaagaATAGATTTATTTCCATAGAAAGTTTAAGCGTGGCTTGTTTCCATGTGATTTTGTTTATTGAAACTCCTTGGACATGCCTAGTGGTGGAGGCTCTGTAG 1830 0.3973 MYVASMRKSFKDSLKLLQADIQHANTLASDFPREYDGASVQMRMSYSPAAHLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPVIVPDSLFDTYDSHISTNTLLAAVIKFPATIPLTHHLRSIIRVSLFITKIIAKNFMDMVASMPAMKLDKLYENAFICEAILRSLPPLAKKYVLQLLHIDGPVSAKLLAEWVLPDGLSKHKVAVDRLVQLRVFVEALDRKNEKTYKVNSTYQKSLQNLLVHGGTLPRESMPSNITVRLPTLEDLETYALAQWECFLLHLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEVFSLFKNRFISIESLSVACFHVILFIETPWTCLVVEAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01905 609 SMART ring_2 151 188 IPR001841 -
Tsu02g01905 609 CDD RING-HC_MKRN 151 189 - -
Tsu02g01905 609 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Tsu02g01905 609 SUPERFAMILY RING/U-box 140 193 - -
Tsu02g01905 609 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Tsu02g01905 609 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 4 246 - -
Tsu02g01905 609 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Tsu02g01905 609 Pfam Transcription factor Tfb2 290 568 IPR004598 GO:0000439|GO:0001671|GO:0006289
Tsu02g01905 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Tsu02g01905 609 PANTHER RING FINGER PROTEIN 41, 151 4 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01905 Tsu-Chr2 17862833 17871757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01905 149 205 C3H Transcription Factor Family AT5G01960 38.596 5.42e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01905 K03144 K25840 gmx:100777843 501.901