Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g01905 | ATGTACGTGGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTCCTTCAAGCTGATATCCAACACGCCAATACTCTGGCGTCGGATTTTCCTAGGGAGTATGACGGTGCATCCGTTCAGATGAGAATGTCATACAGTCCAGCAGCAcacttgtttctgttttttgttcAATGGACAGATTGTCATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACTACCACCATGTCTACCCATGAAAGAAAAGCAAGTATAAGGGAATTCTATGCTGTCATTTATCCCTCTTTATTGCAACTTGAGAAAGGTGTCACTGATTCTGAGGATAAAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGAGGACTATAGACAATCTTCTGATATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCCAACTGTAATCATGCTATGTGCCTCAAATGCTACCGAGAATGGCGAACAAGATCACAGTCGTGCCCATTTTGCCGTGACAGTCTGAAGAGAGTTAACTCAGGGGATCTCTGGGTATTTACTGATAGAAGGGATGTGGTTGATATGGCAACAGTGACAAGGGAGAATCTCAGAAGACTTTTTATGTACATAGATAAGTTGCCTGTGATTGTTCCAGACTCTCTCTTTGACACTTATGACTCTCACATAAGCACAAACACCCTACTCGCCGCAGTTATCAAGTTTCCGGCAACAATCCCTCTGACTCACCATCTCAGAAGTATTATTAGGGTTTCATTGTTCATTACAAAGATCATTGCTAAGAATTTCATGGACATGGTTGCTTCAATGCCTGCAATGAAGCTTGATAAACTCTATGAGAATGCATTCATATGTGAAGCTATTCTCAGGTCTCTTCCACCTCTTGCAAAGAAATATGTGTTACAGCTCCTGCATATTGATGGACCAGTATCGGCTAAATTATTGGCAGAGTGGGTGCTTCCAGATGGACTTTCAAAGCACAAAGTTGCCGTTGATAGATTGGTTCAATTGAGAGTTTTTGTTGAAGCTCTTGACAGGAAGAACGAAAAAACTTACAAAGTCAATTCAACATATCAGAAAAGTCTCCAAAATCTTTTAGTACATGGTGGAACTTTACCGAGGGAATCAATGCCTTCTAATATTACTGTGAGACTCCCAACCTTAGAGGATCTTGAGACTTATGCTCTGGCACAATGGGAGTGTTTCTTGTTGCACCTTATAAGCCCAAGTCATGTTGACAAGACCTTAAATATAAGCTCTTCTCTGATGAAAGTTTTCCAGCGGCGTCTCCTGAGTCAAAGAGACAGAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGAGAATATATCTCTAATTCTGAGGAGAGAGGTGTCGATGCAGGTGACTTGATCTCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGCATATAATATAAACACATTGACCGATTTCCAGAGAAACATTATTAAGGATCTAGCAGACCTTGGACTGGTCAAACTTCAACAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTGGCAACAAATCTTTCAGTGAGCATGACCGAATCATCATCAAGAAAGGaggttttttctttgtttaagaATAGATTTATTTCCATAGAAAGTTTAAGCGTGGCTTGTTTCCATGTGATTTTGTTTATTGAAACTCCTTGGACATGCCTAGTGGTGGAGGCTCTGTAG | 1830 | 0.3973 | MYVASMRKSFKDSLKLLQADIQHANTLASDFPREYDGASVQMRMSYSPAAHLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPVIVPDSLFDTYDSHISTNTLLAAVIKFPATIPLTHHLRSIIRVSLFITKIIAKNFMDMVASMPAMKLDKLYENAFICEAILRSLPPLAKKYVLQLLHIDGPVSAKLLAEWVLPDGLSKHKVAVDRLVQLRVFVEALDRKNEKTYKVNSTYQKSLQNLLVHGGTLPRESMPSNITVRLPTLEDLETYALAQWECFLLHLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEVFSLFKNRFISIESLSVACFHVILFIETPWTCLVVEAL | 609 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g01905 | 609 | SMART | ring_2 | 151 | 188 | IPR001841 | - | |
Tsu02g01905 | 609 | CDD | RING-HC_MKRN | 151 | 189 | - | - | |
Tsu02g01905 | 609 | Pfam | Zinc finger, C3HC4 type (RING finger) | 148 | 194 | - | - | |
Tsu02g01905 | 609 | SUPERFAMILY | RING/U-box | 140 | 193 | - | - | |
Tsu02g01905 | 609 | ProSiteProfiles | Zinc finger RING-type profile. | 151 | 189 | IPR001841 | - | |
Tsu02g01905 | 609 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE | 4 | 246 | - | - | |
Tsu02g01905 | 609 | ProSitePatterns | Zinc finger RING-type signature. | 166 | 175 | IPR017907 | - | |
Tsu02g01905 | 609 | Pfam | Transcription factor Tfb2 | 290 | 568 | IPR004598 | GO:0000439|GO:0001671|GO:0006289 | |
Tsu02g01905 | 609 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 197 | IPR013083 | - | |
Tsu02g01905 | 609 | PANTHER | RING FINGER PROTEIN 41, 151 | 4 | 246 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g01905 | Tsu-Chr2 | 17862833 | 17871757 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g01905 | 149 | 205 | C3H Transcription Factor Family | AT5G01960 | 38.596 | 5.42e-06 | 47.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g01905 | K03144 | K25840 | gmx:100777843 | 501.901 |