Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01901 ATGAGTTGTGGCTGCTTTAGAGCCTCAACTCTCAAGAAAAAAAGGAGTCAATCTCATATTCCTCATGAAATTGATGGGTATCCACTTGAAAATATTGTGCATTTTTCTGAAAAGGACTTGAGATTGGCCACTGATAATTATCATCCAAGCAAAAAGATAGGACGGGGAGGTTTTGGCACAGTTTATCAGGGGACCTTAAAAGATGGAAGACAAGTAGCAGTGAAGAGTCTTTCCGCTGCATCAAAGCAGGGAGTTCGTGAATTTTTAACTGAAATTAAAACTATATCGCTTGTCAAGCATCCAAACCTTGTTGAATTGATTGGTTGCTGCGTTCAAGAACCTAATCGTACATTGGTTTATGAATATGTGGAAAATAACAACCTCGATCGTGCATTACTAGGAAATAGAAGCACAAACATTAAGCTAGAATGGGAAAAAAGATCTAATATCTGCACAGGCACGGCTAGAGGTCTTGCATTTCTTCATGAAGAAGCTGTTCCACACATTGTTCATAGAGACATCAAAGCTAGCAACATATTACTTGACAGAGACTTTAATCCAAAAATAGGAGATTTTGGCCTGGCTAAGTTATTTCCAGAAGACATCACTCATATTAGCACAAGAATTGCCGGAACAACCGGTTACTTAGCACCCGAATATGCAATGGGCGGCCAGTTAACCATGAAGGCTGATGTATATAGTTTTGGAGTTCTTATACTCGAAGTAATTAGTGGCCAAAGCAGTGCGAGGACAAACTGGGGAGGGTCAAACAAATTCCTCTTGGAATGGGCCTGGCAACTTCATGAAGAAGGGAGACTATTGGAGCTTGTGGATCCAGAAATGGTTGAATATCCTAAGGAAGAGGTTACTAGGTATATGAAAGTAGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCATCGATGTCGCAGGTTGTTGATATGCTCTCGAAGAAAATTAGACTGAATGAAAAGCAACTAACAGCACCAGGGTTCTTCCAGACTTCAGGAGAATCCTCTCTAAAGAAGTCATCCATTGGCATTGAGTCCACAAGCTATCAGTTTAGTTCTGCCCCTGCCAGTTTTACTCAGATCACCCCACGGTGA 1110 0.4126 MSCGCFRASTLKKKRSQSHIPHEIDGYPLENIVHFSEKDLRLATDNYHPSKKIGRGGFGTVYQGTLKDGRQVAVKSLSAASKQGVREFLTEIKTISLVKHPNLVELIGCCVQEPNRTLVYEYVENNNLDRALLGNRSTNIKLEWEKRSNICTGTARGLAFLHEEAVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPEDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEVISGQSSARTNWGGSNKFLLEWAWQLHEEGRLLELVDPEMVEYPKEEVTRYMKVAFFCTQAAASRRPSMSQVVDMLSKKIRLNEKQLTAPGFFQTSGESSLKKSSIGIESTSYQFSSAPASFTQITPR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01901 369 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01901 369 SUPERFAMILY Protein kinase-like (PK-like) 31 339 IPR011009 -
Tsu02g01901 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Tsu02g01901 369 PANTHER - 1 351 - -
Tsu02g01901 369 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 351 - -
Tsu02g01901 369 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Tsu02g01901 369 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Tsu02g01901 369 ProSiteProfiles Protein kinase domain profile. 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01901 369 CDD STKc_IRAK 53 319 - -
Tsu02g01901 369 PIRSF ILK 7 330 - -
Tsu02g01901 369 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Tsu02g01901 369 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01901 Tsu-Chr2 17803790 17808827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01901 12 333 Receptor kinase-like Gene Family AT1G07650 53.374 2.79e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g01901 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01901 - - gmx:100775344 631.713