Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01876 ATGAAAGTTAACTCACCTGTTACCCTCAAGTTTGAAGATATTGTGCATAAAACCAAAACTAGCAAAAGGGAAGGTGAATTGAAAGGGATATGTGGCATTGTATTTCCAGGTGAATTGTTAGCAATTTTAGGCCCTTCAGGTAGTGGTAAATCAACTCTAATAAACGCTTTAGGAGGAAAGCTAAATGATAGTAATATAACAAAAGGAACCATAACCTACAATGGGAAACCACTTTCAAAATCAGTGAAACAGAAATTAGGATTTGTTGCTCAACATGACATCTTCTGTACTCACTTATCAGTAAATGAGACACTAGTCTTTTCGGCACTTCTTCGGTTGCCGAAGAGTCTCTCAAAACAAGAGAAAATGTTGAAAGTTAAAGAAGTTATAGATGAGATTGATTTGAATCATTGTAAGGATACTATAATGGGAGGTCCACTTTTAAGAGGTGTTTCAGGTGGAGAAAGGAAGAGAGTTTGTATAGGGCAAGAATTGTTGACTAATCCAACTCTATTACTTGTTGATGAAGCTACTACAGGTCTTGATTCAACCACAGCTAGAAAACTTGTGATGAATTTGTGTGAGTTAGCTAAAGCTGGAAGAACGGTCGTAATGACTATACATCAACCTTCTACTAAACTCTTTCACATGTTTCAGAAGATTTTACTGTTATCGGATGGTAATGGTATGTACTTTGGAAAAGGAGATTATGTTCTTGATTACTTCTCCGGTATCGGTTATGCTCCATTTGTTGCCATGAATCCTACAGATTTCTTACTTGATCTTGCAAATGGTATATATTCTGGAAATTCAGAAGAAGATACAGGTAGTACAAAACAAGAATTGGTATCTGCTTTTGAGAGTAACCTTGCATACCAAGTAAAGACTGAACTTCAAAATTCAATGGTTTTATTTCATGACGACAGTTCAAAACATGAGATGTTTGATCATTATTTCACAACTTGGTGGGAGCAGTTTTCTATATTTCTTAGAAGGGgtttcaaagaaagaaaacatgaacaattttttgtccgcAAAATCTGTCATGTTTTGGCCTTATCATTCTCTGCAGGCCTTGTCTGGTGGCATTCTAAACCTGATCAAATAAAAGACAAGGTAGGACTACTTTTCTACTATGCACAATTCTGTGGATTCATACCTATGGTTCAATCCCTCTTTACATTTCCCGAAGATCGTGCAATGATAATAAAAGAAAGTGCAACTTTTCATGCCAACACTTTTTTAATCACCATTACTTATTGGATGGGAGGACTTAAAGCCAATGCTTCAAATTTCTTTCAAACACTAAGTGTCTCTCTTTTATATGCTTTGGTATCACAAAGTATTGGACAAGCTATTAGTGCAGTGCTGATAAATAATCCAAGGTTGGTTGTTACAGTTGGATCAGTGGTTATGACATTACTTCTTCTAACTAATGGATACTTTGTTCAAAATATGCCAACATTTGTATCATGGATTAAGTACTTATCTCATAGCTATTATTAG 1506 0.3459 MKVNSPVTLKFEDIVHKTKTSKREGELKGICGIVFPGELLAILGPSGSGKSTLINALGGKLNDSNITKGTITYNGKPLSKSVKQKLGFVAQHDIFCTHLSVNETLVFSALLRLPKSLSKQEKMLKVKEVIDEIDLNHCKDTIMGGPLLRGVSGGERKRVCIGQELLTNPTLLLVDEATTGLDSTTARKLVMNLCELAKAGRTVVMTIHQPSTKLFHMFQKILLLSDGNGMYFGKGDYVLDYFSGIGYAPFVAMNPTDFLLDLANGIYSGNSEEDTGSTKQELVSAFESNLAYQVKTELQNSMVLFHDDSSKHEMFDHYFTTWWEQFSIFLRRGFKERKHEQFFVRKICHVLALSFSAGLVWWHSKPDQIKDKVGLLFYYAQFCGFIPMVQSLFTFPEDRAMIIKESATFHANTFLITITYWMGGLKANASNFFQTLSVSLLYALVSQSIGQAISAVLINNPRLVVTVGSVVMTLLLLTNGYFVQNMPTFVSWIKYLSHSYY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01876 501 ProSitePatterns ABC transporters family signature. 151 165 IPR017871 GO:0005524
Tsu02g01876 501 SMART AAA_5 36 228 IPR003593 -
Tsu02g01876 501 Pfam ABC transporter 33 178 IPR003439 GO:0005524
Tsu02g01876 501 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 3 501 - -
Tsu02g01876 501 Gene3D - 8 244 IPR027417 -
Tsu02g01876 501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 251 IPR003439 GO:0005524
Tsu02g01876 501 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 501 - -
Tsu02g01876 501 Pfam ABC-2 type transporter 208 310 IPR043926 GO:0140359
Tsu02g01876 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 259 IPR027417 -
Tsu02g01876 501 Pfam ABC-2 type transporter 414 501 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01876 Tsu-Chr2 17528491 17531325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01876 27 212 Calmodulin-binding Proteins AT2G36910 31.282 1.59e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01876 K05681 - gmx:100800295 695.271