Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01875 atggATAGCACAGATTCATCATCATGTTCTCAGCATCCACATCTTCCACCAGGCTTTAGATTCCATCCAACTGATGAAGAACTTGTGGTTCACTACCTAAAGAGAAAAGCTGCATCAGCACCTCTACCTGTAGCTATCATAGCAGAAATTGATCTCTACAAATTCGACCCATGGGAACTTCCAAGTAAAGCAACTTTTGGGGAACAAGAATGGTACTTTTTCAGCCCAAGAGATAGGAAATACCCAAATGGGGCCCGGCCCAATAGGGCTGCAACATCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGGGTTAAAACTAATTGGATTATGCATGAGTATAGGCTTATCACTGATcacaataatattaataataattattccTATAATGCAAGCTCAAAAACTCCTCTTCTGTCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCTTTGAggCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACCACTAATGGATCAATATGATAAAGAGCTTTCAATGGaacatacatataatatgcAACAAAACTCTAAACCTTCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTTGATGGAATCTTAGCAACTGATCAAGGAATGCAAAATGGTTGTGACATAAACTCAAATAATAAGGTTGATCATAACAATGAATCATTCCCTATGAAACGTGCATTAAATGTATCATCACAATTTTGGAATGAAACAGGTTCACCAGGGTCATCTTCTTCAAGCAAGAGATTCCATGGAGATCTTAATAGTGGAAACAACAATGTTGAGGAAAATAATTCATTTGTTTCTTTGCTTAGTCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGTGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTGGAACTAA 1050 0.3619 MDSTDSSSCSQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNINNNYSYNASSKTPLLSSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPPLMDQYDKELSMEHTYNMQQNSKPSRSTSYGLENDDNFFDGILATDQGMQNGCDINSNNKVDHNNESFPMKRALNVSSQFWNETGSPGSSSSSKRFHGDLNSGNNNVEENNSFVSLLSQLPPNTTFHQNSILGDGVMRQQFQLPDINWN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01875 349 ProSiteProfiles NAC domain profile. 15 191 IPR003441 GO:0003677|GO:0006355
Tsu02g01875 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 324 - -
Tsu02g01875 349 SUPERFAMILY NAC domain 10 191 IPR036093 GO:0003677|GO:0006355
Tsu02g01875 349 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g01875 349 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 324 - -
Tsu02g01875 349 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Tsu02g01875 349 Gene3D NAC domain 24 196 IPR036093 GO:0003677|GO:0006355
Tsu02g01875 349 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01875 Tsu-Chr2 17518291 17520428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01875 5 349 NAC Transcription Factor Family AT1G61110 54.596 1.02e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g01875 NAM 9.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01875 - - gmx:100797132 490.345