Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01874 ATGAGTTCCCCGGTGCCATCTATCATCCAGGATTTGCTGAACGAATTACTTCAGGGGCCGAATCATCTGCTCCGTGAGGTGGAGACCTTCTCCTCTCTTGTTGACGACCTTAGAGGCTACTCATGGAGATTGTCGTCTCATGAGTCCTGCTTCCTTACGCGTTTGCTCCGCTTGAGGGCCGAGCTGGTTGATAAAGTTGCGCTTGTATTTTCGATCGAAGATGCGGAGCGGCGACATCGTCAAACGATGTCCAGGACTTTTGATCAGATCTGGGTGGTGCTCGCCGGGATGGATATCACGTCAAAGTTCACTTCCCCTGAGAGTATTCTCCGTTTTAGGGAAGGTTATTCACTATTCAACGGTGATGGTGAGGATAAACTTGTCATTGTTGAAACTGTGCGAGCAGACGAGTTAGTCACTGCGGTTAACGGGAAAGAGCCTCACTATTTTTACATGGCGATTAAGGGAGTTTATGACGACGTGCTAACGTCCTTTGAGAAAGAGACGATAGCCTTTTTAGAGAGCTTTAACCTTATTGATATTAAGGATTTGCTTCGGCGCGAAACTAATGCCAAGCGTCTTACGAACTTTATACGAAGAATGCAGACCGTTTCTGATGAAGAATGGATGTCCTTCTTGGCCAAATCTAAAGCAAAAAAGCTTCAACCTGACGAAATCGCCCTTCCTGACGACTTTCTGGTGGTGGGTGAGACTAAAGGCTCCAAGAGAAAACGAAGGGGTGATAGGGCGATACGGGGCGATAAGGGGAGGAGTACCCAAGATGTGGGTTCCTCCAGCCCGGCGGCTAACGTAGCGTTTGGAGTTTCTGTTTCTCGTTCGCCGCAGCCTAGTGGTAGTCGTGTTTTGCGAAGTCATTCTACTGATGTTATTCAGGCTGAGGATGTCCAGATGGGTGAGTTTATTGTTGATGGCGGGGTGACCGTTCAGACTGCTGGTCCACCCCCCGTTGTCGTTGttttaacGACTAGGTACCTTACTTTGATGGTCTTGGCACTCTCCTTTTCGCCGAAAGTTGTTAACAGCGTGACGTGCCCCATTACTTCTACCTGCTCGCCTCCGAAACCTACCAAAGTTCCATTGTATGGCTGCAACTGCTCTCCTGCTAATTGCATGGCTTTGAAAGCCTCCCAGTACATGATGTCTGCCGAGCTGCCGGAGTCTATCAGAACTCGCTTCACATCGCAGTTTAGTATCTGGACTTGGATTACCAGAGGGTCGTCGTCGTGGGGGAACACGCCTTCTCCATCACTGGGTGAGAATGAAATTTCGGGGGCTCTTGAAGAAGATACGTGTGCCACCGTGTTTGTTTCCTGGATGATCCTCCTGAGATCACATAGGCACTATTATGGTGGTGGAAGAAAATTGAGAAGCTCTAGTGATAATGGTACTGATCTTGTCACTAATTTGCCTGGTCAGCCTCATGTAGATTTTCAGCACTATGCTGGTTATGTCACTGTCAATGAAACTAATGGAAGAGCActcttttattggttttatGAGGCTATCACTAAGCCAGAAGAGAAACCATTGGTGTTATGGCTTAATGGAGGACCTGGGTGCTCTTCTGTAGGATATGGTGCAACACAAGAGATTGGTCCATTTTTAGtggataataataatgatggaCAAGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACATGTTATTCTTAGAATCTCCTGTCGGAGTTGGCTTTTCATACTCAAATACAACCAGTGATTATGAACAATTGGGTGATGATTTAACAGCTAATGATGCTTACAATTTTCTACACAATTGGTTCCTCAAGTTTCCATCATATAGAACTAAGACATTTTACATAGCAGGGGAGAGTTATGCAGGAAAGTATGTACCAGAACTTGCTGAACTTATCCATGATAGAAACAAGGACCCATCCCTTTACATTGATCTCAAGGGAATTTTGCTGGGTAACCCTGAAACATCTGATGCTGAGGATTGGATGGGACTAGTTGATTATGCTTGGAGTCATGCTGTGATATCTGATGAAACTcataaaacaattaaaagaaGTTGTGATTTTAATAGTAGTGATCCATGGAAAAATCAAGATTGTGATCAAGCTGTTGATGAAGTACTTAAACAGTATCATGAAATTGATATCTATAGTCTTTATACTTCTGTCTGTTTTGCCTCTACAGCACGTTCTAATGGTCAAACAATGCAAACTTCCACCAAACGTTCATCCAAAAGTTCATCCAAAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGATTATGCTACAGCTTTTTATAATAGACCAGATGTTCAGAAGGCCCTTCATGCTAGTGATGGTCACAATCTAAAGAATTGGACTATTTGCAACAACAAGATATTCAATGATTGGGCAGATTCAAAACCATCAGTTATACCAATTTACAAGAAACTTATCTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTTCTATCAACTAGGTACAGCTTAAGTACTCTAGCTTTGCCTGTGACTAAACCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTATGAAGAATATCAAGGGCTTACATTTGCAACATTTAGAGGCGCTGGTCATGCAGTTCCATGTTTTAAACCAAGCAACTCACTTGCATTTTTCACCTCCTTTCTACATGGAGAATCACCTCCTTCTacaaaataa 2736 0.4317 MSSPVPSIIQDLLNELLQGPNHLLREVETFSSLVDDLRGYSWRLSSHESCFLTRLLRLRAELVDKVALVFSIEDAERRHRQTMSRTFDQIWVVLAGMDITSKFTSPESILRFREGYSLFNGDGEDKLVIVETVRADELVTAVNGKEPHYFYMAIKGVYDDVLTSFEKETIAFLESFNLIDIKDLLRRETNAKRLTNFIRRMQTVSDEEWMSFLAKSKAKKLQPDEIALPDDFLVVGETKGSKRKRRGDRAIRGDKGRSTQDVGSSSPAANVAFGVSVSRSPQPSGSRVLRSHSTDVIQAEDVQMGEFIVDGGVTVQTAGPPPVVVVLTTRYLTLMVLALSFSPKVVNSVTCPITSTCSPPKPTKVPLYGCNCSPANCMALKASQYMMSAELPESIRTRFTSQFSIWTWITRGSSSWGNTPSPSLGENEISGALEEDTCATVFVSWMILLRSHRHYYGGGRKLRSSSDNGTDLVTNLPGQPHVDFQHYAGYVTVNETNGRALFYWFYEAITKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNNNDGQGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSDYEQLGDDLTANDAYNFLHNWFLKFPSYRTKTFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKRSCDFNSSDPWKNQDCDQAVDEVLKQYHEIDIYSLYTSVCFASTARSNGQTMQTSTKRSSKSSSKMMPRMMGGYDPCLDDYATAFYNRPDVQKALHASDGHNLKNWTICNNKIFNDWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLALPVTKPWRPWYHENEVSGWYEEYQGLTFATFRGAGHAVPCFKPSNSLAFFTSFLHGESPPSTK 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01874 911 Pfam Serine carboxypeptidase 478 904 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 Gene3D alpha/beta hydrolase 468 728 IPR029058 -
Tsu02g01874 911 Gene3D - 763 799 - -
Tsu02g01874 911 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 450 908 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 MobiDBLite consensus disorder prediction 243 267 - -
Tsu02g01874 911 Gene3D - 810 904 - -
Tsu02g01874 911 ProSitePatterns Serine carboxypeptidases, serine active site. 618 625 IPR018202 GO:0004185
Tsu02g01874 911 PANTHER CARBOXYPEPTIDASE 450 908 - -
Tsu02g01874 911 PRINTS Carboxypeptidase C serine protease (S10) family signature 555 567 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 PRINTS Carboxypeptidase C serine protease (S10) family signature 874 887 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 PRINTS Carboxypeptidase C serine protease (S10) family signature 604 629 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 PRINTS Carboxypeptidase C serine protease (S10) family signature 568 578 IPR001563 GO:0004185|GO:0006508
Tsu02g01874 911 SUPERFAMILY alpha/beta-Hydrolases 469 905 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01874 Tsu-Chr2 17492106 17515794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01874 768 905 Calmodulin-binding Proteins AT2G22960 33.094 1.63e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01874 K16297 - gmx:100793427 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01874 02 17492106 17515794 Tsu02g01874 02 17492106 17515794 ECH
Tsu02g01874 02 17492106 17515794 Tsu08g04131 08 59491642 59495090 PCT