Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01872 ATGGCTTGTAGTAGCAACCAAAGTGTCTCTTTATCTAAGATGACATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGCAACAATTTCGCTGATCACCTTTTTGCTGCTTTTCAAAGAAAAGGCATTGTTGCCTTCAAGGATGATATAAAGCTCAAGAAAGGGGAACTTATATCATCTGAGCTTCTAAAAGCCATTGAAGGatctcaaattttaattgttatctTCTCGAGAAACTATGCTTCTTCTACATGGTGCTTGCAGGAACTAGAAAAAATTGCTGAATGCAACGTATTAGGACAAGCTGTGCTACctattttttatgatgtgaGTCCATCTGAGGTACGAAAGCAAAGTGGAGATTTTGAAAAAGCATTTATGGAGCATAAAGATAGattcaaagaaaaattagaGGAAGTGCAAAGATGGAGAGAAGCTCTAACACAAGTAGCCAACCTCTCTGGTTTTCATATAAAGGATAAGCCACAAAATGCagagattaaaaatattattaaagagGTAACAAGGTTATTGGGTTACAAATTTTCAAGTTTACCTGATGATATAGTTGGGATAGACTCACAAGTGGAAGAATTAATAAACCTTATGTTGTTGGACTCGGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGAGCGGAATAGGGAAGACAACTCTTGCTCGTGCTTTGTATTCTAGAATCTATAATCAATTTGAAGCTTGTTGCTATATTGATGATGTAAGTGAAACTTATGGATACCATGGCCCAATTGGAGTGCAAAAGCAACTTCTTGCTCAAACTCTACAAGAAGAAAATCTTCAGATATGCAATCTTTATATGGCATCTAATTTGATTCGCAGTAGGctatgtaaaataaaatcccTTGTAGTTCTGGATAATGTTGATCAACTTGAACAACTGGATAAATTGGCCATGAAACGAGAGTGGCTAGGCACAGGGAGTAGAATCATTATAATTTCTAGGAATAGCCATATCTTGAGAGCGCATGGAGCGGAAGTTTACAACGTTCAACACTTGGATCATAGTAACGCCCTTCAATTGTTTTGTCGGAAAGCTTTCAAAAGTGATGATATCTTGAATGGTTACAAAGACTTGATAGATGATGTACTAAAATATACAAGTGGCCTTCCATTAGCAATTAAAACATTGGGCTCATTTTTGTATAGTCGAGATATCTCTGAGTGGAGAAGTGCATTGGCAAGATTAAGAGAGAATCCAAGGGCAGATTTTATGGATGTACTCCGAACTAGTTTCGATGGACTAAATGATACAGAAAAGGATATATTTCTAGATATTGCTTGTTTCTTTGCTGGAGGAATTGAGAGATGCGTGAAAAGAATTTTAGATATTCGTGGATTTCATCCCGAAATTGGTTTAAGAGTTCTCATTGACAAATCATTTATAACCTGTGAGAGAGGGTTAATTGATATGCATGATTTATTCAAAGAATTGGGCAAGAGCATCGTTAGAGAAACATCACCCAAAGAACCAAGAAAGTGGAATAGGATTTGGGACTGCAGGGATTTCTACAATGTTATCTCACAAAACATGGCATCAGAAAACATTGAAGCTATAGTTGTGGGGCATTTTCCAAAAAATGATGAAGAAACAGAAGCAATGACAACATTGAGGGCTGATGGTTTAGCTCAAATGAGTCGCCTTAAATTGCTCAGGCTGTTTGGTTTAAATTTTTCAGGAAGTCTCAATTTTCTTTCAAGTGAACTGGAGTATCTTAATTGGAATAAATATCCTTTCACTTGTTTGCCATCAAGGTTTGAGTCGGATAAACTTGTTGAATTGATCCTACGTGGTAGCAGCATCAGGAAACTATGGGAGGGCACAAAGCTTCTACCCAGTTTGATATATATTGATCTCTCTCGCTCTAAAAATCTTATTAAGATGCCAAGTTTTTTGGATGTTCCAAATCTTGAGCGGCTATATCTTGAAGGATGTATAAAACTTGTGCAAATTGATCCATCCATTGGCATCTTAAGAAGGCTTTCCGACTTACATTTGAAAGATTGTACAAATCTGGTCAGTATTCCTAACAACATTTTTGGTCTGAATTCTCTCAAGTATCTAAATCTCTCAGGCTGTCGAAAATTACTTTATAATAAGTTGTTAAAGATGCAAAGGCAAATAGAAAATTTGGAGATGCCTGATAGGAAAGAAAGTACTACCCAACGTCAATCAACATCATTCACAGTTTTTAAGCCGTCTTTTCAGTTTTCGAAGATTTTCCGAAAACGAGAAGATTCAGTATGCTTATTGTcgccttcatcatcatcatctcgtCTATTGTGTTTACAACATCTTGACATAAGTTTCTGCAAtatttttgaaatccctaatgCTATTGGGTGCTTACACTCCTTAGAAAAGCTAAATTTGGGGGGGAACAATTTTGTTAAACTACCTTCTAGCATCAAGGAACTTTCCAAACTTAGATATTTGAACATGGAGCACTGTAAGCAGCTGAAATATTTTCCTGAACTCACAGTAAGCGAAACATTTTGTGGTAGAGATAGAGTAGAAAAAAGTGGATTATATATGTTTGATTGCCCCAATTTAATTGAGATTGAAAGCTGTTATAGAATGGCTTTTTCTTGGATGATACAACAATTCCTTAAGGTGTACATGAAATCCGATCCCCCAAAAGGTAAGGTTGAGATTGTTATTCCTGGAACTGAAATTCCAATGTGGTTCAATAAACAAAATGTGGGTAGTTCGATAAGCATGAATCCATTACCCAATATGGATGACAATAATTGGATAGGTGTTGCTTGCTGTGCAACATTTGTAGTACATGTTGATCCAACTAGATTAGGTATATGGATTCCTCATTTTAGTTTCGGTTTTGATTGTAAGGGAAGAAGATGGATGGATTCTCATTTTTTTCCCTCACATTTTAGAAAAGGTCTGGTTACCGTTGATTTAGATCACCTGTGTGTATATTTTTACACTAGGGAATTCTTTATTCATTGTAAAAATCATGTAACTGAGGGATTGCATGATATCATTCAATTTTCTGCTTTCGATCCATTGGGTTTGCCTGTCGAGGTCAAAAATTGTGGTTATCGTTGGATATTTAAGGAGGATCTGGAGCAATTAAACCAACAAATGATGCACAGTGGAAATTCATCTGTCCAAAACATCATGTATTTAACAAATGATTAG 3210 0.3498 MACSSNQSVSLSKMTWKYDVFVSFRGEDTRNNFADHLFAAFQRKGIVAFKDDIKLKKGELISSELLKAIEGSQILIVIFSRNYASSTWCLQELEKIAECNVLGQAVLPIFYDVSPSEVRKQSGDFEKAFMEHKDRFKEKLEEVQRWREALTQVANLSGFHIKDKPQNAEIKNIIKEVTRLLGYKFSSLPDDIVGIDSQVEELINLMLLDSDDDVRVVGICGMSGIGKTTLARALYSRIYNQFEACCYIDDVSETYGYHGPIGVQKQLLAQTLQEENLQICNLYMASNLIRSRLCKIKSLVVLDNVDQLEQLDKLAMKREWLGTGSRIIIISRNSHILRAHGAEVYNVQHLDHSNALQLFCRKAFKSDDILNGYKDLIDDVLKYTSGLPLAIKTLGSFLYSRDISEWRSALARLRENPRADFMDVLRTSFDGLNDTEKDIFLDIACFFAGGIERCVKRILDIRGFHPEIGLRVLIDKSFITCERGLIDMHDLFKELGKSIVRETSPKEPRKWNRIWDCRDFYNVISQNMASENIEAIVVGHFPKNDEETEAMTTLRADGLAQMSRLKLLRLFGLNFSGSLNFLSSELEYLNWNKYPFTCLPSRFESDKLVELILRGSSIRKLWEGTKLLPSLIYIDLSRSKNLIKMPSFLDVPNLERLYLEGCIKLVQIDPSIGILRRLSDLHLKDCTNLVSIPNNIFGLNSLKYLNLSGCRKLLYNKLLKMQRQIENLEMPDRKESTTQRQSTSFTVFKPSFQFSKIFRKREDSVCLLSPSSSSSRLLCLQHLDISFCNIFEIPNAIGCLHSLEKLNLGGNNFVKLPSSIKELSKLRYLNMEHCKQLKYFPELTVSETFCGRDRVEKSGLYMFDCPNLIEIESCYRMAFSWMIQQFLKVYMKSDPPKGKVEIVIPGTEIPMWFNKQNVGSSISMNPLPNMDDNNWIGVACCATFVVHVDPTRLGIWIPHFSFGFDCKGRRWMDSHFFPSHFRKGLVTVDLDHLCVYFYTREFFIHCKNHVTEGLHDIIQFSAFDPLGLPVEVKNCGYRWIFKEDLEQLNQQMMHSGNSSVQNIMYLTND 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01872 1069 SUPERFAMILY L domain-like 488 842 - -
Tsu02g01872 1069 Gene3D - 179 349 IPR027417 -
Tsu02g01872 1069 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Tsu02g01872 1069 Gene3D Ribonuclease Inhibitor 763 888 IPR032675 -
Tsu02g01872 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 443 IPR027417 -
Tsu02g01872 1069 SMART till_3 17 156 IPR000157 GO:0007165
Tsu02g01872 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 189 1050 IPR044974 GO:0006952
Tsu02g01872 1069 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Tsu02g01872 1069 Gene3D Ribonuclease Inhibitor 547 744 IPR032675 -
Tsu02g01872 1069 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 189 1050 - -
Tsu02g01872 1069 Pfam TIR domain 17 177 IPR000157 GO:0007165
Tsu02g01872 1069 Pfam C-JID domain 904 1046 IPR045344 -
Tsu02g01872 1069 PRINTS Disease resistance protein signature 292 306 - -
Tsu02g01872 1069 PRINTS Disease resistance protein signature 697 713 - -
Tsu02g01872 1069 PRINTS Disease resistance protein signature 216 231 - -
Tsu02g01872 1069 PRINTS Disease resistance protein signature 384 398 - -
Tsu02g01872 1069 Gene3D - 350 433 IPR042197 -
Tsu02g01872 1069 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Tsu02g01872 1069 SMART AAA_5 213 351 IPR003593 -
Tsu02g01872 1069 Pfam Leucine rich repeat 780 835 IPR001611 GO:0005515
Tsu02g01872 1069 ProSiteProfiles Leucine-rich repeat profile. 802 823 IPR001611 GO:0005515
Tsu02g01872 1069 Gene3D - 14 178 IPR035897 -
Tsu02g01872 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01872 Tsu-Chr2 17464413 17469242 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01872 18 806 WRKY Transcription Factor Family AT4G12020 29.670 1.91e-84 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01872 - - mtr:MTR_4g080777 1416.75