Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01868 ATGGCTAGGTCCATTGATTCCATTAAAGATATCAATGATTTGAAAGAGCTATGGAAGCTGGCAGTTAGGATTGAAGATCTTTGGTCTGTTGTTAGCAAAAGCAAAGAAGAACATTTGGAATTTATCCTCCTAGATAAACAGGGTGATCAGATACAAGTTGTTGTGCCTAATGACTTGCTTGAGCATTGGAAGTCTAACTTGAAAGAAGGTGGTACATATGTCATGAGGAATTTCAAGGTAAAGGAAAATGATTTTCCTTTCAAGGCATGTCATCATGCTTTTAAGCTCATTTTCAACTCCGGGACAAACGTCACTGTCAAAGATTTCCCCGACATTCCGTCTTGCAAATTCAACTTCAAGCCTTTTGCTGAGATCAATGCTGGAAACTATCAGCCAGATTGCTTATATGATGTTATTGGTAGATTTAAACAAATGACCTACAGTCAGCAGCATGCTGgcccaaaaaaaatttgtgctGCGTTTACCGTTGTTGATTCAAGtgGTGTGGAACTCAGCTGCACTCTCCGGGGTCATTTTGCGACTACTTTGTTCAATTATCTTAATGGAAGAACTAACATTGGGCCCGTTGTGATAATTATCAAGCATGGAAAGATCAAGGATGCTTCAGatgGTTATGCTATTTCAATTGGAAATGCATGGAATGGAACAAAAGTTTTCATTGATGCAGATTATGATGATGCAAAATTTTTTGCCAAGAGTGTTGGCTCGACCCAAGGTTCCACGAATTCTCAGTTTTCTGGTGGCGATCGCTTTTTAATTGGCGCGCCTATTATTCAGTTCTCGGAACTCATGAACTTGCCTGAGAACACCATATGCATCACAATGGCAACTACTAGGAAAATACTTACCTCAAAACATGGATGGTACTATAAACAATGTGATCATTGCCCCAAGAAGACCGACGGACATGCACCGCCTTACAAGTGCTTGCTTGGCCATCCTTCTCCAAAACCTGTCATAAAGTTCAAGTTAGATGTAGAGGTTTTCAATGGAGATGACAAATTGAGTTTTATCTTTTGGGACCATGATTGTGTTGAGCTGGTGGGAATCACAGCTCCTGACTTAAGGCAATTAATGATCGATGCTGGTGAAGATGATCCATTGGAATATCCTGAAATGTTGGATGAATTTATGAACAAGACTTATGCTCTCATAATCAAAATGCAGCCTAAATACAAAGAAGCTTCTGTTTTAGGTTACAGAACTGATGTTGATACTGTTTTCAAAGTCAAGGAACAACTTCCAGGAGATGAAGATCAATTCCCAGGAAATGAGAAAACCTCCAAACTTACCAACGATGTGCCTCAAAAAGATGAGCAGcCAATATCCGATGATTTGGTTGAAAGTTCTGATGCAAGTGAAGATCTTATTATATGTGCACCACAAATTACTCCAAAGAAAAGAGTTTTGGATGATGTAAATGGTACCAAGATCGCTGCTCGAGGATCTGCTTtggcaaaaacaaaaacttcaaaGATTATAAGGCAGATTAAAACTGAATGA 1524 0.3812 MARSIDSIKDINDLKELWKLAVRIEDLWSVVSKSKEEHLEFILLDKQGDQIQVVVPNDLLEHWKSNLKEGGTYVMRNFKVKENDFPFKACHHAFKLIFNSGTNVTVKDFPDIPSCKFNFKPFAEINAGNYQPDCLYDVIGRFKQMTYSQQHAGPKKICAAFTVVDSSGVELSCTLRGHFATTLFNYLNGRTNIGPVVIIIKHGKIKDASDGYAISIGNAWNGTKVFIDADYDDAKFFAKSVGSTQGSTNSQFSGGDRFLIGAPIIQFSELMNLPENTICITMATTRKILTSKHGWYYKQCDHCPKKTDGHAPPYKCLLGHPSPKPVIKFKLDVEVFNGDDKLSFIFWDHDCVELVGITAPDLRQLMIDAGEDDPLEYPEMLDEFMNKTYALIIKMQPKYKEASVLGYRTDVDTVFKVKEQLPGDEDQFPGNEKTSKLTNDVPQKDEQPISDDLVESSDASEDLIICAPQITPKKRVLDDVNGTKIAARGSALAKTKTSKIIRQIKTE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01868 507 MobiDBLite consensus disorder prediction 421 450 - -
Tsu02g01868 507 SUPERFAMILY Nucleic acid-binding proteins 117 241 IPR012340 -
Tsu02g01868 507 Gene3D - 256 418 IPR012340 -
Tsu02g01868 507 CDD RPA1_DBD_B_like 161 241 - -
Tsu02g01868 507 SUPERFAMILY Nucleic acid-binding proteins 275 397 IPR012340 -
Tsu02g01868 507 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Tsu02g01868 507 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 23 349 - -
Tsu02g01868 507 Gene3D - 110 251 IPR012340 -
Tsu02g01868 507 PANTHER REPLICATION FACTOR A 1, RFA1 23 349 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu02g01868 507 Gene3D - 4 108 IPR012340 -
Tsu02g01868 507 CDD RPA1_DBD_A_like 19 104 - -
Tsu02g01868 507 Pfam Domain of unknown function DUF223 41 131 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01868 Tsu-Chr2 17408464 17411035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01868 1 371 Core DNA Replication Machinery Family AT5G08020 20.663 1.87e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01868 - - lang:109343677 307.76