Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01857 ATGGGAGCGGAAGTGATTGTGAATTGGGGTACGTGGGAGGAGCTTCTTCTTGGTGGTGCTGTTCTCCGACACGGCACTCGTGATTGGTCCGTCGTCGCTGCTGAACTCCGAGCTCGAACCCTTTCTCCATACGCTATCACACCTGagGTTTGTAAAGCCAAATATGAAGACATACAACAACGCTATTCAGGGTGCACGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGAGTAGAAGAGCTTAAGAGAGCTTTGGAGAAATCCGAAAATTCAATTGGGTCTCTTCAATCAAGGCTTGAATCCCTTAAAGCTGACAAGAACGAGAAAAGAGATGATTATCATGTTGAAAACGACTCAGTTGAACCAGAATTACGTGTTCCTTCACAGAAATTGGAGAGAGTCGAATCTTCCACTAAAGAGACATCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAAACCGAGACAAATTGGTCTCATGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCAGGTGTTTCAGGGTCTATTGAACATGAGAAAGCTCTGAATGTAGATAAGTTGACAGATACTGTATATGAAGGACAGGGAGGGTGTTGTAAAAAAAGGAGAGGGAAGAGAAAGAGGAAGGATTGTGGCAGAAATATTAATGAAGCGAGTGTAAGGGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGTAACTGTGGTGAGGTTGTTAAATCTTCTGGTATAACTGAGGAGAATACAAACTTGAAAAAGGATGAAATGAAAGATATGATGGAGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCAGTCGCAAGCATGATAGCCAGAAGCGAGCAAGGTACAGACAGTTAATCCGAAGACACATGGACTTTGACACTATAAAGTCAAGCATTAgcaacaaaacaattaattcaAAGGTGGAACTTTTCAGAGACATGCTTCTACTAGCCAACAATGCTTTGATTTTCTACTCCAAGAACACTCGTCAATATAAATCTGCGGTGCTCATGAGAGACACTGTCACAGAAAAACTGAGGGAGAATGGCACATTATGCACTAAGAGTGAGATACAAGCCAATGTCGACTCTAACTCTATGGTATTACCTGTTCACGATCCTCCTGTGAAAGTCAGAAGTGTTCGCCCCAGTACCCGAAAGTTCGATGTTGCAGAGACAGCTGATGTAAGCAATCCTGTTTCTGGGCTCTCACATGTAGCCAAGAAACCTAGTAGTAGTAAAGAGGATTCTCCATCTTCAGCGAAATCCTTACACATCAAGAAAGCTTTTGGTGGTCCTAAAAAACTTGAACCTGCAACTCCAACGAGGGAAACgaaggaaaagaaaaggagaaCTAAGTAA 1410 0.4128 MGAEVIVNWGTWEELLLGGAVLRHGTRDWSVVAAELRARTLSPYAITPEVCKAKYEDIQQRYSGCTAWFEELKKKRVEELKRALEKSENSIGSLQSRLESLKADKNEKRDDYHVENDSVEPELRVPSQKLERVESSTKETSKDGLSAGSFTHQTETNWSHECQVPAMSSEDMEITPGVSGSIEHEKALNVDKLTDTVYEGQGGCCKKRRGKRKRKDCGRNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGITEENTNLKKDEMKDMMEILDSVLEIKGASCFSRKHDSQKRARYRQLIRRHMDFDTIKSSISNKTINSKVELFRDMLLLANNALIFYSKNTRQYKSAVLMRDTVTEKLRENGTLCTKSEIQANVDSNSMVLPVHDPPVKVRSVRPSTRKFDVAETADVSNPVSGLSHVAKKPSSSKEDSPSSAKSLHIKKAFGGPKKLEPATPTRETKEKKRRTK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01857 469 Pfam Bromodomain 271 351 IPR001487 GO:0005515
Tsu02g01857 469 MobiDBLite consensus disorder prediction 102 139 - -
Tsu02g01857 469 CDD Bromodomain 266 362 - -
Tsu02g01857 469 SMART bromo_6 263 367 IPR001487 GO:0005515
Tsu02g01857 469 PANTHER BROMODOMAIN PROTEIN 1 467 - -
Tsu02g01857 469 SUPERFAMILY Bromodomain 258 364 IPR036427 GO:0005515
Tsu02g01857 469 Coils Coil 70 111 - -
Tsu02g01857 469 MobiDBLite consensus disorder prediction 415 469 - -
Tsu02g01857 469 Gene3D - 257 376 IPR036427 GO:0005515
Tsu02g01857 469 MobiDBLite consensus disorder prediction 415 435 - -
Tsu02g01857 469 MobiDBLite consensus disorder prediction 102 150 - -
Tsu02g01857 469 ProSiteProfiles Bromodomain profile. 286 348 IPR001487 GO:0005515
Tsu02g01857 469 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01857 Tsu-Chr2 17275174 17279986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g01857 Bromodomain 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01857 - - gmx:100804245 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01857 02 17275174 17279986 Tsu08g04141 08 59614573 59619652 PCT