LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g01845	ATGGAACAAAACCAATTTGATGGAATTATTCCAACTACTTTTGGAATTATTCCTCCAAGTATAGGAAACTGTCAAAAGTTACAATATCTAGATCTTTCTCATAATAAGCTTGGAGGAGCCCTACCTTCAAAGCTTTTTAATCTTTTTGCTTTATCAAACTTATTGAACTTGTCGCACAATTCTTTAAAGGGTAGCTTACCAGAAGAAGTGGGtaagttaaaaaatattgatatgctAGATGTCTCTGAGAATCATTTATCTGGTGATATTCCTAGAGCAATTGGTGAATGTCTAAGCTTAGAATACCTTCTTTTGCAAGATAACTCCTTTAACGGAACAATACTGTCCTCCTTGGCTTCTCTCAAAGGTGAGGTACCGACACACAGTGTCTTTGGAAATATAACCCAAGTAGAAATTATTGAGAACAAAAAGCTTTGTGGAGGTATTTCACAACTGCATCTACCACCATGCCCTATCAAGGCTAAGGTTTCATACCAAGAATTGCATCAAGGAACCGATGGGTTCTCGCCTACAAACTTGATTGGATCAGGAAATTTTGGTTCTGTGTACAAAGTAAATCTTGAGTCAGAAGATCATGTTGTTGCCGTAAAGGTTCTGAACCTCCAAAAAAAGGGAACTCACAAGGGTTTTATTGTTGAATGTAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTTTAACTTGTTGTtctagtacaaattacaaaggTCAAGAATTCAAAGCTCTAGTTTTCGATTACAAGAAAAATGGAAGTTTAGAACAATGGTTGCATCCCGAGATTTTAAATGAAGAGAATCCAACAACATTGAGCCTTGGTCAAAGATTAAACATAATTATCGATGTTGCCGATGCATTACGTTATCTTCATCAAGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGTCAAGCAATGTCCTTCTTGATATTGACATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTCTTCTCATCCATTGGCGGCAACTCTCAGAAGGATACCAAGTATGGAATGGGTTCTGAAGTTTCCACATGTGGTGACATGTATAGCTTTGGAGTCCTGGTGATGGAAATGCTTACCGCTAAAAGACCTACTGATTTTGAAGATGGTCAAAATCTGCATAACTTCGTTGCAATTTCATTTCCTAATAACCTTATGTAG	1197	0.3576	MEQNQFDGIIPTTFGIIPPSIGNCQKLQYLDLSHNKLGGALPSKLFNLFALSNLLNLSHNSLKGSLPEEVGKLKNIDMLDVSENHLSGDIPRAIGECLSLEYLLLQDNSFNGTILSSLASLKGEVPTHSVFGNITQVEIIENKKLCGGISQLHLPPCPIKAKVSYQELHQGTDGFSPTNLIGSGNFGSVYKVNLESEDHVVAVKVLNLQKKGTHKGFIVECNALKNIRHRNLVKILTCCSSTNYKGQEFKALVFDYKKNGSLEQWLHPEILNEENPTTLSLGQRLNIIIDVADALRYLHQECEQLVLHCDLKSSNVLLDIDMVAHVSDFGIARLFSSIGGNSQKDTKYGMGSEVSTCGDMYSFGVLVMEMLTAKRPTDFEDGQNLHNFVAISFPNNLM	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g01845	398	ProSiteProfiles	Protein kinase domain profile.	175	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01845	398	Gene3D	Phosphorylase Kinase; domain 1	163	256	-	-
	Tsu02g01845	398	PANTHER	LRR RECEPTOR-LIKE KINASE	121	162	-	-
	Tsu02g01845	398	PRINTS	Leucine-rich repeat signature	73	86	-	-
	Tsu02g01845	398	PRINTS	Leucine-rich repeat signature	27	40	-	-
	Tsu02g01845	398	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	306	318	IPR008271	GO:0004672\|GO:0006468
	Tsu02g01845	398	Gene3D	Transferase(Phosphotransferase) domain 1	258	397	-	-
	Tsu02g01845	398	SMART	serkin_6	175	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01845	398	PANTHER	OS04G0122200 PROTEIN	121	162	-	-
	Tsu02g01845	398	PANTHER	OS04G0122200 PROTEIN	161	397	-	-
	Tsu02g01845	398	ProSitePatterns	Protein kinases ATP-binding region signature.	181	204	IPR017441	GO:0005524
	Tsu02g01845	398	SUPERFAMILY	Protein kinase-like (PK-like)	158	392	IPR011009	-
	Tsu02g01845	398	PANTHER	LRR RECEPTOR-LIKE KINASE	15	123	-	-
	Tsu02g01845	398	PANTHER	LRR RECEPTOR-LIKE KINASE	161	397	-	-
	Tsu02g01845	398	Gene3D	Ribonuclease Inhibitor	1	162	IPR032675	-
	Tsu02g01845	398	Pfam	Protein kinase domain	178	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01845	398	SUPERFAMILY	L domain-like	4	140	-	-
	Tsu02g01845	398	PANTHER	OS04G0122200 PROTEIN	15	123	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g01845	Tsu-Chr2	17102100	17104024	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g01845	15	398	Receptor kinase-like Gene Family	AT3G47090	38.431	5.71e-105	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Tsu02g01845		Pkinase	2.9e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g01845	-		-	mtr:MTR_5g026200	511.146