Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01830 ATGACATCCTCAAATGTTGATCGGAAACCAATGGTTGGAATGGAATTTGATAATATAGATGTAGCTTATCAGTTTTGGCTTGCTTATAGTGTACATGCTGGCTTTGGAGTTAGAAAACgttttacaaacaaaaataaagtcGGCGCTATATCGTCATATAGGTTTGTTTGTTCTAAGGAAGGGAAAAAGGAGATAAAGAAATCAAATGCTCTTGCAAGCTTTCGTAGAGCTGAAACTAGAACGGATTGTAAAGCAAGGATTTCACTTGGGTGTCATAATGGAAAGTTTGTCATCCATGAATTTGTAGAGGATCATAACCATACTCTACAACCTCCGGAGACAACACATTTGCTTGCATCACATAGAAAGATAACTGAAGTACAAGCAAATGAGATTGATTTAGCTGAGGACTCTGGATTAAGGCAAAAGGCAACATTTCAACTTATGCGCACACATGCAGGGGCTAGAGCTAATGTTGGATTTAcacaaatggatgtaaaaaattacatcaatgAAAGAAGACGGAAAAAGATGGAGTACGGCGAAGCTGCATGTAATGCCCAATattttcaacaacaattgtTGGAGAATCCTTCTTTCTTTCATGCACATCAGCTGGATGTAGACGAAAAAATCACAAATGTGTTTTGGTGTGATGCAAATATGATATTGGATTATGGATATTTTGGCGACGTTGTGTCATTGGACACTACATATTGTACCAACAATGTGAATAGACCACTTGCTCTATTTTCTGGTTTCAACCACTATAGGGGTTCAATCATTTTTGGCGCAGCACTATTGTACGATGAGACAACCGAATCTTTTAAGTGGTTGTTTGATACTTTCTTACAagccaacaacaacaagaagcCAAGGACTGTCTTCACTGACCAAGCTCCGGCAATGGTTAGGGCACTTGCTGAAGTGATGCCTGAGACTCACCATGGTTTATGCACTTGGCACTTGTTGCAAAATGGAATTAAAAACATTGGGAACTTGATGAAGGGAGGGAGCTATTTTTTAACAGATTTCAAGAAATGCATGTACAATATTGACATTGAAGCAGATTTTGAAACAGCTTGGAATAACTTGATAAACGATTATAATGCTCATGACAGTGATTGGCTCAAATCAGTttatgccattaaaaaaaaatgggctTCATGTTATATGAAGGAATCGTTAACACTAGGCATGCGGAGTACCCAAATCAGTGAAAGTGTTAATGCTCACTTCAAATCTTGTATGAAACCGAATGTGGATATCGTACAATTCTTCAAACATTTCGAACAAGTTATTGAAGAGAAGAGAGCAAAAGAATTGCATCATGAGTATGAGTCCTCACACAAGCTTCCAAGGTTAATATATGAGTTGTCACCAATATTAGTACAAATGGGAAAAGTATATACACACACTGTATTTGAGTTGTTTCAAAATGAATTTAAGTTATTCTTAGCTTTATCGTTATCAGAGAGAAATGAGTCTCACTCTTTATGTGAATATGTCATCACTATGGGGAACCATGAAAGATCTTGGAGAGTTTCATTTGATCGTGCTTCTAACTCCATTACTTGTAGCTGTAAAAATTTTGAGACATTTGGCATACTTTGTTCACATGCATTAAAAGTGATTGAAGCAAATGATGTTAAGATCATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGATGCCCGTTGTGGCGTTGTGCAAGATTTTAGGGGAAAAGAGGTTGAAGGAGATCCAAAGTTATCTAGAACACGGAAATTTAAAGAAGTTGTCTCTAAATTTATAAAGGAGGTCGCCGAGGCATCACTTTGTGAAGAGGACCTCAAGATTGTTGAAGAAAGTGTAGATGTCATGCGTAAGAAAATAATGGAGCTTCGCTCACAAGCCAAAGAGAATGAAAGTCATAACAGTGATAATCCAACATTTCCAAATTGTGATGCTATGAAATCGAAGAGATTGAAGATACGGCCTAATTTAAAGAGACAATCACAAAAGCGATTTAAGAGTTTCATTGAGCTTCAACCTAgagggaaacaaaaaaaaagtttcacctAA 2067 0.3483 MTSSNVDRKPMVGMEFDNIDVAYQFWLAYSVHAGFGVRKRFTNKNKVGAISSYRFVCSKEGKKEIKKSNALASFRRAETRTDCKARISLGCHNGKFVIHEFVEDHNHTLQPPETTHLLASHRKITEVQANEIDLAEDSGLRQKATFQLMRTHAGARANVGFTQMDVKNYINERRRKKMEYGEAACNAQYFQQQLLENPSFFHAHQLDVDEKITNVFWCDANMILDYGYFGDVVSLDTTYCTNNVNRPLALFSGFNHYRGSIIFGAALLYDETTESFKWLFDTFLQANNNKKPRTVFTDQAPAMVRALAEVMPETHHGLCTWHLLQNGIKNIGNLMKGGSYFLTDFKKCMYNIDIEADFETAWNNLINDYNAHDSDWLKSVYAIKKKWASCYMKESLTLGMRSTQISESVNAHFKSCMKPNVDIVQFFKHFEQVIEEKRAKELHHEYESSHKLPRLIYELSPILVQMGKVYTHTVFELFQNEFKLFLALSLSERNESHSLCEYVITMGNHERSWRVSFDRASNSITCSCKNFETFGILCSHALKVIEANDVKIIPEKYILRRWTRDARCGVVQDFRGKEVEGDPKLSRTRKFKEVVSKFIKEVAEASLCEEDLKIVEESVDVMRKKIMELRSQAKENESHNSDNPTFPNCDAMKSKRLKIRPNLKRQSQKRFKSFIELQPRGKQKKSFT 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01830 688 Coils Coil 612 632 - -
Tsu02g01830 688 MobiDBLite consensus disorder prediction 632 688 - -
Tsu02g01830 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 628 IPR031052 GO:0006355
Tsu02g01830 688 PANTHER OS03G0181600 PROTEIN 9 628 - -
Tsu02g01830 688 SMART 26again6 524 551 IPR006564 GO:0008270
Tsu02g01830 688 Pfam SWIM zinc finger 522 547 IPR007527 GO:0008270
Tsu02g01830 688 ProSiteProfiles Zinc finger SWIM-type profile. 513 549 IPR007527 GO:0008270
Tsu02g01830 688 Pfam FAR1 DNA-binding domain 24 111 IPR004330 -
Tsu02g01830 688 Pfam MULE transposase domain 232 326 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01830 Tsu-Chr2 16743462 16745528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g01830 MULE 1.4e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01830 - - cam:101507984 1031.55