Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01822 ATGAACGACTTGTTTTCAAATTCCTTCAAAAAATACACTGATTTGAAGGAACAAGCCCACAATGGTGATGTCGAGGCAGGGAACAAAGAAAGTGTCAATCTCGATAAATTCTTTGAAGATGTCGAGAATATAAAAGAGGACATGAAATCAATTGAAGTATTGTTTAAGAAATTGCAAGAGGCTAATGGAGAAAGTAAAACCGTGCACAATGCTAAAACCATGAAAGAACTTCGATCGCGGATGGACAAAGATGTTGAACAAGTCCTTAAACGCGTCAAAGTAATTAAAGGAAAACTTGAAGCATTGGATCGTTCCAATGCGGCTAATAGAAATGTTCCAGGGTGTGGTCCAGGTTCATCAGCAGATAGAACTAGAACTTCGGTTGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATAGTTTTCAAGGGTTGAGAGCAAAAATGCACTCCGAGTATAAGGAAACGGTGGAACGTAGATATTTTACAATAACTGGGGAGAAGGCGGATGAAGAAACTATAGATAATTTGATATCAAGTGGTGAAAGTGAAAATTTCATGCAAAAGGCAATTCAAGATCAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATTCTGTTAAGGAAATAGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGGCAACATCTTAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTGTGGAAGCTAGAGAAACACAAAAGGATTCTAGGAAGTGGACATGTTATGCTATACTTCTTGGTATTGTTCTTGTTATTGTGCTCTTGTTTCCTCTCTTCATGTCACTTTTACCTCATTTGTTAAGAAGATGA 921 0.3735 MNDLFSNSFKKYTDLKEQAHNGDVEAGNKESVNLDKFFEDVENIKEDMKSIEVLFKKLQEANGESKTVHNAKTMKELRSRMDKDVEQVLKRVKVIKGKLEALDRSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDSFQGLRAKMHSEYKETVERRYFTITGEKADEETIDNLISSGESENFMQKAIQDQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLVEARETQKDSRKWTCYAILLGIVLVIVLLFPLFMSLLPHLLRR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01822 306 CDD SynN 34 191 IPR006011 GO:0016020
Tsu02g01822 306 Coils Coil 41 61 - -
Tsu02g01822 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Tsu02g01822 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Tsu02g01822 306 SMART tSNARE_6 199 266 IPR000727 -
Tsu02g01822 306 MobiDBLite consensus disorder prediction 108 127 - -
Tsu02g01822 306 PANTHER SYNTAXIN-124-RELATED 6 296 - -
Tsu02g01822 306 CDD SNARE_syntaxin1-like 203 265 - -
Tsu02g01822 306 Gene3D - 34 161 - -
Tsu02g01822 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Tsu02g01822 306 Pfam SNARE domain 242 292 IPR000727 -
Tsu02g01822 306 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu02g01822 306 PANTHER SYNTAXIN 6 296 IPR045242 -
Tsu02g01822 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Tsu02g01822 306 Gene3D - 196 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01822 Tsu-Chr2 16503258 16504178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01822 1 304 SNARE and Associated Proteins AT1G61290 76.974 5.69e-176 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01822 K08486 - gmx:100818999 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01822 02 16503258 16504178 Tsu08g04160 08 59763013 59764225 PCT