Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01796 ATGCGcaatttcaatttcttccaaCGTTTCTCTAGAAATTTCCGTGACTATGACTCTCAGTTCAAGCTCGTTCTTCTCTGCACCACCGTAAGTGGTGGTGGTCTTTTGGCTTACGGTGAGGCTGTTGCTACATCTGAAACGGCGGTACCTGAGAAGAAAAAGGTGTTGGTGCTGGGAACTGGTTGGGCAGGAACAAGTTTCTTGAGGAATCTCAACGATCCTCGATATGAGGTTCACGTTGTGTCTCCTCGGAATTATTTTGCGTTCACTCCTCTGCTGCCTAGTGTTACATGTGGCACTGTCGAGGCTCGCAGCATTGTTGAACCTGTTCGCAATATCTTCAGGAAGAAACATGTGGACTCTCGATTCAGTGAAGCAGAATGTATCAAGATTGATGCAGTAAACAGAAAAGTTTACTGTCGATCTAATATAAACAACAATTCAAATGAAAAACAAGACTTCGTCGTGGACTATGACTACTTAATCATTGCTGTAGGAGCACAGGtcaacacatttaatactcctGGAGTCACGGAGCATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAAAGGATTAGAAGAACTGTAATTGACTGCTTTGAGAGAGCAAGTTTGCCAAGTGTAAGTGatgaagagagaaagagaattcTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCTGCACTTCATGATTTTGTTAGTGAGGATTTGGTCAAATTATATCCTGGAGTAAAAGATTTAGTTAAAATTACGCTTCTGGAAGCTGGAGGTCATATCTTGAGCATGTTTGACAAAAGAATAACAGCTTTTGCTGAAGACAAGTTCCGAAGAGACGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGGTGTGTTATATAGGAAATTTGACTTTATTATTTGTTCTGATTcataatttcatattatttttttcttggtcaggtgtgtatttaatttattatttacttCTCATTGATTATTATGAACAGATTAACAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTTGAGGGAACAAACAATGTGTATGCGCTTGGTGATTGTGCTACAATAAACCAACGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGACTGATACAGACAACTCGGGAACACTTACGCTCAAAGAATTTCAGGAAGTGATGAATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTAAAGAATAAACAGATGCATGGCATTGCTGATCTCTTGAAAGAATCCAAGGGAGATGTTCAAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACTGCACTTATTAATGTGGACTCAGAGATGAAATTTCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGTGCCTACCTAGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTATTAGGTTCAGGGAAGAAGGGCGTCATCGCTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTCGCTCCTCTGGGAGGAGAGCAGACAGCTGCACAGCTACCTGGAGATTGGGTTTCAATTGGACACAGCAGTCAGTGGCTGTGGTATTCTGTCTATGCAAGTAAGCAAGTTAGCTGGCGCACAAGGGCATTAGTGGTGTCAGACTGGATGAGACGATTTATTTTTGGGAGGGACTCAAGTCAAATCTGA 1719 0.395 MRNFNFFQRFSRNFRDYDSQFKLVLLCTTVSGGGLLAYGEAVATSETAVPEKKKVLVLGTGWAGTSFLRNLNDPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKHVDSRFSEAECIKIDAVNRKVYCRSNINNNSNEKQDFVVDYDYLIIAVGAQVNTFNTPGVTEHCHFLKEVEDAQRIRRTVIDCFERASLPSVSDEERKRILHFAIVGGGPTGVEFAAALHDFVSEDLVKLYPGVKDLVKITLLEAGGHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVCYIGNLTLLFVLIHNFILFFSWSGVYLIYYLLLIDYYEQINRRAIATDEWLRVEGTNNVYALGDCATINQRKVMEDIAAIFKKTDTDNSGTLTLKEFQEVMNDICERYPQVELYLKNKQMHGIADLLKESKGDVQKESIELNIEELKTALINVDSEMKFLPATAQVASQQGAYLAKCFNRMEECEKNPEGPIRFREEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWMRRFIFGRDSSQI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01796 572 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Tsu02g01796 572 SUPERFAMILY EF-hand 364 457 IPR011992 -
Tsu02g01796 572 Coils Coil 434 454 - -
Tsu02g01796 572 PANTHER NADH DEHYDROGENASE 4 572 IPR045024 GO:0003954|GO:0006116
Tsu02g01796 572 Gene3D - 43 310 - -
Tsu02g01796 572 Gene3D - 414 571 - -
Tsu02g01796 572 Gene3D - 329 388 - -
Tsu02g01796 572 SUPERFAMILY FAD/NAD(P)-binding domain 213 367 IPR036188 -
Tsu02g01796 572 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Tsu02g01796 572 SMART efh_1 374 402 IPR002048 GO:0005509
Tsu02g01796 572 PANTHER NAD(P)H DEHYDROGENASE B2 4 572 - -
Tsu02g01796 572 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 298 IPR023753 GO:0016491
Tsu02g01796 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Tsu02g01796 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Tsu02g01796 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Tsu02g01796 572 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01796 Tsu-Chr2 16155345 16159642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01796 1 572 EF-hand Containing Proteins AT4G05020 66.560 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01796 K03885 - gmx:100809915 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01796 02 16155345 16159642 Tsu08g04169 08 59843423 59848182 PCT