Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01792 ATGATGCTACCGTTCGGCATTGGCCATAACGGCGATTTTCCAGTGGCTGGCTGGCATGTAAAGGCTTTTCTGCAAACAGAGCACTTGTGGCTGAGAGATCAGCGGCAGGAAAGAGACAAAAATCTCTTCTTGCGGAAGACAAAGTCGAGAACAGAAAAACTCAAAAGTTGTTCCGAGAATCTGGAATCACTGAATCAAACATTGGGTGATCTTCAAAACAAGGAAAGGGATGTTCGAATAGAAATTGATGAAGCTGAGAGCACAGGAGTGAGGAAAAGGACAAATGAAGTGATTGGTTGGCTTCAGGAATTTCAAAAACTTCAAGAGAAAATGGTGGATATTCCAAATTCTCAAGAAGTTCAAAGTAACCAATGTCTGAGTGGTTACTGCCCAAAGAACTGTGTGTCAAGCTACAAGTTGGGAAAGAAAATTGTTGAGAGGCTCAATGTGGCAAAGGACATGCTTTCTAAAGCTGGCAAGATTCTGATTACTATAAGGCAACCACCTAAACCTGTAGATGAGATGCCTTGTGGTGAGACAGTAGGTTTGGACTTGATGATCCAGAAAGTATGGAATACTCTCGAAGATGATAATGTGGGTATAATTGGTTTATACGGAATGGGTGGGGTCGGAAAAACTACCCTTTTGAAGAGAATTCACAGTGAATTAGGAAAGAGGAAGCATAGTTTTGATCTAGTGTTGTGGGCAGTGGTTTCTAAAGATTGTgatatcaataaaatcatgactGACATCAGTAATAGGTTAGGGATCGATGATGGTTTTTGGAAACGATGTAGTCAAGAGCAAAGAGTAGCAAAGGTTTATGAACGGTTGAAAGAAAAGAAGTTTTTGTTGATGTTAGATGATTTGTGGGGAAAGCTGGATCTTGAAAGGTTAGGAGTTCCAGTTCCAAAAGAAACTAACAACAAATCAAAAGTAATGTTCACAACACGGTTCGAGGATGTGTGTGCTAAAATGCAAGCTCAAAAGAAATTCAAGGTGGAATGCTTATCAGAGAAAGAAgcatttgatttgttttgtaaGAAAGTAGGTGAGGAGACTTTAAGATCTCACACAGAGATCCTAAAGCTAGCACAGGAAGTGGCTAAAGAATGCAGAGGATTGCCGCTAGCATTAATCACTGTGGGAAGTGCCATGGCTGGAGTGAAAAGTTTTGAAGCTTGGATGGTTGCGAAAAATAGTTTGAGGAGTTTTTCGTGGATAGCCTTAGATTTGGAGGATAAAGTTTTTCGTATCCTCAAGTTTAGCTATGACAAACTTCCAGATAAGGCACATAAAAGCTGTTTCTTGTATTGCGCACTATACCCAGAAGATAAAGGATTAGACATTGATGAACTTATTGATCGATGGATTGCTGAAGGATTTATTGACAAAGATGGCAAGAGTATATATGATATGTACAACCAAGGGAAATctattattgaaaaattaatactTTCGTGCCTATTAGAGGAGAGTTTTGAAGCTAGATCTCGCAATTATGAtaagatgaaaaatataattaagatgcATGATGTGATTAGAGATATGGCACTATGGTTATCTCGAGATGAAGAtgaaaacaaagacaaaatTGTAGTTCAAGGGGAAGCATTTTCCATGTCAGAAATGGATTCTAAAAGATTGAATGTGGTACAGAGGATTTCAGTAATAACTACTATGGATTTAAAAGAAAGCTTGAATTTACCGGCTTGTCCAAATGTCATCACCCTTTGTATAAGGAATATGTCATTGTACACCATTCATGCTCCTAGTTTATCATCAAATTTGCAATCCATAAAAAGGTTGAGGGTGTTGGATTTATCAGGTaatgtttctttttctattgAACAACTCTCAGAACTTGGTGAGTTAATCAATTTGGAATTCATTAACCTCTCAGGAACATCGATATGTGGTTTGCCTATTGaattgaagaagttgaaaaacTTGAGGGTATTCCTGATGGATGATATGGCAATCAATGATGTTGTTGAATTTCCTTTGGAAGTAATAGAAAGTCTTGAACAATTAAAGGTGTTTAGATTTAGTAGGAAAGCTTTACATTGGCTTACACGCAGCTTTGTACAAGGAGAGATATCATTACTAGAGAAGCTGGAATCCCTACCAAAATTGGAGGAACTAAGCATCCATCTAACTTCAATCGCTAGTGTGCGGAGACTGCTTCACTCCACCAAATTACGAGCTTCCTCAAGACGTCTCAAGCTTTCTTATACCAGTAGATATTTTAATAAAGAGCTAGACACACTTGAAATGTCATCATTATCAGCAACCATGTCAACAATGACACGTTTGGACCACATACATCTTTGGAGGATTGACAACCTCGTGGATGGTTCACCGGTTACTGACAAATGGCATCTTGGCAAGCTTCGCCAAGTGCGCATATATGATTGTGGTTCAATAACTCATTTGACGTGGTTGAGGTATGCTCCGCTTCTCGAGTATCTTGATGTTTTTGGTTGTAGTTCCATTGAACATGTGGTGAAGGATAATGACGAAGAAGCTGACTCAAAATCTAACAATGACAATATATTCACAAATCTTATAGAACTTTACCTTGGATATATGTCAAAGTTAGTGAGTATCCACAAAAGAGCTTTGGCTTTTCCTTCCTTAAAATGTATTCTCGTAAATGGGTGCTCTAATCTGAGGAAGCTTCCTTTCAATTCCAGCTTTGCTTCCAAGGACAACTTGATTGCAATTCAAGGAGAGACAGAGTGGTGGGACAATTTAGAGTGGGATGATACAATTATGGAACACTTACTACGtcctaaatttcaaaataaatccAGTCTTTCTCAAAAGATGTTATGGGAAGCTACATTGAACTCTCGTAGGTTATTGAAAAGTggtgcaccatgcaccactcGATCAACTTGTTCATATTAG 2913 0.3659 MMLPFGIGHNGDFPVAGWHVKAFLQTEHLWLRDQRQERDKNLFLRKTKSRTEKLKSCSENLESLNQTLGDLQNKERDVRIEIDEAESTGVRKRTNEVIGWLQEFQKLQEKMVDIPNSQEVQSNQCLSGYCPKNCVSSYKLGKKIVERLNVAKDMLSKAGKILITIRQPPKPVDEMPCGETVGLDLMIQKVWNTLEDDNVGIIGLYGMGGVGKTTLLKRIHSELGKRKHSFDLVLWAVVSKDCDINKIMTDISNRLGIDDGFWKRCSQEQRVAKVYERLKEKKFLLMLDDLWGKLDLERLGVPVPKETNNKSKVMFTTRFEDVCAKMQAQKKFKVECLSEKEAFDLFCKKVGEETLRSHTEILKLAQEVAKECRGLPLALITVGSAMAGVKSFEAWMVAKNSLRSFSWIALDLEDKVFRILKFSYDKLPDKAHKSCFLYCALYPEDKGLDIDELIDRWIAEGFIDKDGKSIYDMYNQGKSIIEKLILSCLLEESFEARSRNYDKMKNIIKMHDVIRDMALWLSRDEDENKDKIVVQGEAFSMSEMDSKRLNVVQRISVITTMDLKESLNLPACPNVITLCIRNMSLYTIHAPSLSSNLQSIKRLRVLDLSGNVSFSIEQLSELGELINLEFINLSGTSICGLPIELKKLKNLRVFLMDDMAINDVVEFPLEVIESLEQLKVFRFSRKALHWLTRSFVQGEISLLEKLESLPKLEELSIHLTSIASVRRLLHSTKLRASSRRLKLSYTSRYFNKELDTLEMSSLSATMSTMTRLDHIHLWRIDNLVDGSPVTDKWHLGKLRQVRIYDCGSITHLTWLRYAPLLEYLDVFGCSSIEHVVKDNDEEADSKSNNDNIFTNLIELYLGYMSKLVSIHKRALAFPSLKCILVNGCSNLRKLPFNSSFASKDNLIAIQGETEWWDNLEWDDTIMEHLLRPKFQNKSSLSQKMLWEATLNSRRLLKSGAPCTTRSTCSY 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01792 970 Gene3D Ribonuclease Inhibitor 699 914 IPR032675 -
Tsu02g01792 970 ProSiteProfiles Leucine-rich repeat profile. 602 623 IPR001611 GO:0005515
Tsu02g01792 970 PANTHER OS12G0491200 PROTEIN 58 927 - -
Tsu02g01792 970 Pfam NB-ARC domain 186 425 IPR002182 GO:0043531
Tsu02g01792 970 SMART AAA_5 198 356 IPR003593 -
Tsu02g01792 970 Gene3D Ribonuclease Inhibitor 521 695 IPR032675 -
Tsu02g01792 970 Coils Coil 54 88 - -
Tsu02g01792 970 PANTHER DISEASE RESISTANCE PROTEIN RP 58 927 IPR044974 GO:0006952
Tsu02g01792 970 Gene3D - 172 336 IPR027417 -
Tsu02g01792 970 Gene3D - 337 423 IPR042197 -
Tsu02g01792 970 PRINTS Disease resistance protein signature 598 614 - -
Tsu02g01792 970 PRINTS Disease resistance protein signature 372 386 - -
Tsu02g01792 970 PRINTS Disease resistance protein signature 277 291 - -
Tsu02g01792 970 PRINTS Disease resistance protein signature 201 216 - -
Tsu02g01792 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 439 IPR027417 -
Tsu02g01792 970 CDD AAA 181 230 - -
Tsu02g01792 970 SUPERFAMILY L domain-like 509 902 - -
Tsu02g01792 970 Gene3D - 424 519 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01792 Tsu-Chr2 16088474 16094208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01792 185 902 WRKY Transcription Factor Family AT5G45050 23.027 7.47e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01792 - K13459 mtr:MTR_4g091380 1130.55